#!/bin/bash 


# VARIAVEIS


cd ${Eta_run}

# head is used for symbolic links.  
# head="ftn" for HP workstations
# head="fort." for most (all?) others.

head="fort."
if [ ${restrt} == COLD ]  ; then #if not restrt
rm -f ${head}*
#Limpeza do diretorio run
rm -f ${Eta_run}/preproc.*
rm -f ${Eta_run}/sst12m.file
rm -f ${Eta_run}/CNST.file
rm -f ${Eta_run}/INIT.file
rm -f ${Eta_run}/bndy.newstyle
rm -f ${Eta_run}/BNDY.file
else
#Limpeza do diretorio run
rm -f ${Eta_run}/preproc.*
rm -f ${Eta_run}/sst12m.file
rm -f ${Eta_run}/BNDY.file
fi
EINTLM0D=`cat ${Eta_run}/ETAIN | grep TLM0D | cut -d= -f2`
EINTPH0D=`cat ${Eta_run}/ETAIN | grep TPH0D | cut -d= -f2`
EINIM=`cat ${Eta_run}/ETAIN | grep "IM=" | cut -d= -f2 |head -1`
EINJM=`cat ${Eta_run}/ETAIN | grep "JM=" | cut -d= -f2`
EINLM=`cat ${Eta_run}/ETAIN | grep "LM=" | cut -d= -f2`
EINDLMD=`cat  ${Eta_run}/ETAIN | grep DLMD | cut -d= -f2`
EINDPHD=`cat  ${Eta_run}/ETAIN | grep DPHD | cut -d= -f2`
if [ -s ${Eta_scr}/CONF ]; then
   CNFTLM0D=`cat ${Eta_scr}/CONF | grep Lon | awk '{print $2}'`
   CNFTPH0D=`cat ${Eta_scr}/CONF | grep Lat | awk '{print $2}'`
   CNFIM=`cat ${Eta_scr}/CONF | grep IM | awk '{print $2}'`
   CNFJM=`cat ${Eta_scr}/CONF | grep JM |awk '{print $2}'`
   CNFLM=`cat ${Eta_scr}/CONF | grep LM |awk '{print $2}'|head -1`
   CNFDLMD=`cat  ${Eta_scr}/CONF | grep DLMD | awk '{print $2}'`
   CNFDPHD=`cat  ${Eta_scr}/CONF | grep DPHD | awk '{print $2}'`
fi
if [ "${EINTLM0D}" != "${CNFTLM0D}" ] || [ "${EINTPH0D}" != "${CNFTPH0D}" ]  \
|| [ "${EINIM}" != "${CNFIM}" ] || [ "${EINJM}" != "${CNFJM}" ]  \
|| [ "${EINLM}" != "${CNFLM}" ] || [ "${EINDLMD}" != "${CNFDLMD}" ]  \
|| [ "${EINDPHD}" != "${CNFDPHD}" ] 
then
   ${Eta_run}/Eta_fix.sh
   err=$? 
   echo value of err is $err 
   if [ $err -ne 0 ] ; then
     echo "FALHA!!!!!!! VERIFICAR output do script Eta_fix.sh "
     exit 1
   fi
else
   cp ${Eta_fix_conf}/ZEFF ${Eta_run}/ZEFF
   err=$?
   if [ $err -ne 0 ] ; then
     echo "FALHA!!!!!!! VERIFICAR Arquivo ZEFF"
     exit 1
   fi
fi
if [ ${restrt} == COLD ]  ; then #if not restrt
  ${Eta_run}/Eta_sst.sh
  echo " "
  echo Starting eta initialization and bc file creation...
  ##################################  
  # Define o mapa de solo
  if [ "${qtdtypsolo}" == "18" ] ; then
    cp ${Eta_fix_conf}/SA_18SoilTypes_map_1km_2d.bin     ${Eta_run}/SoilMap_1km_2d.bin 
  elif [ "${qtdtypsolo}" == "15" ] ; then
    cp ${Eta_fix_conf}/Global_15SoilTypes_map_1km_2d.bin ${Eta_run}/SoilMap_1km_2d.bin 
  fi
fi
#
##################################   
# 
# SOIL,VEG,SST and SNOW links
#
rm -f ${head}*
ln -s -f ${Eta_fix_conf}/deta                               deta
ln -s -f ${Eta_fix}/veg.eta.grb                            veg.eta.grb
ln -s -f ${Eta_fix}/maxsnoalb.bin                          maxsnoalb.bin
ln -s -f ${Eta_fix}/alb1_ieee                              alb1_ieee
ln -s -f ${Eta_fix}/alb2_ieee                              alb2_ieee
ln -s -f ${Eta_fix}/alb3_ieee                              alb3_ieee
ln -s -f ${Eta_fix}/alb4_ieee                              alb4_ieee
ln -s -f ${Eta_fix}/ivgtyp_1d_ieee                         ivgtyp_1d_ieee
ln -s -f ${Eta_fix}/isltyp_1d_ieee                         isltyp_1d_ieee
ln -s -f ${Eta_fix}/islope_1d_ieee                         islope_1d_ieee
ln -s -f ${Eta_fix}/rfusaflw_ieee                          rfusaflw_ieee
ln -s -f ${Eta_fix}/imsmask.ascii                          imsmask.ascii 
ln -s -f ${Eta_fix_conf}/vegmask2d_umd_proveg_radam.bin    vegmask2d_umd_proveg_radam.bin
ln -s -f ${data_veg}/FCOVER_rec_1999-2014.bin              FCOVER.bin
ln -s -f ${Eta_fix_conf}/deta                              ${head}16
ln -s -f ${Eta_fix}/maxsnoalb.bin                          ${head}20 
ln -s -f ${Eta_fix}/alb1_ieee                              ${head}21
ln -s -f ${Eta_fix}/alb2_ieee                              ${head}22
ln -s -f ${Eta_fix}/alb3_ieee                              ${head}23
ln -s -f ${Eta_fix}/alb4_ieee                              ${head}24
ln -s -f ${Eta_fix}/ivgtyp_1d_ieee                         ${head}30
ln -s -f ${Eta_fix}/isltyp_1d_ieee                         ${head}31
ln -s -f ${Eta_fix}/islope_1d_ieee                         ${head}32
ln -s -f ${Eta_datain}/sfcanl                              ${head}33
ln -s -f ${Eta_run}/sst_${Run_Date}.bin                    ${head}39
ln -s -f ${Eta_datain}/sstgrb.index                        ${head}40
ln -s -f ${Eta_fix}/rfusaflw_ieee                          ${head}42
ln -s -f ${Eta_fix}/imsmask.ascii                          ${head}43
ln -s -f ${Eta_fix_conf}/vegmask2d_umd_proveg_radam.bin     ${head}45
ln -s -f ${Eta_run}/SoilMap_1km_2d.bin                     ${head}49
ln -s -f ${Eta_run}/initial_soil_moist_1km_2d.bin          ${head}48
#
####################################
ln -s -f veg.bin ${head}71
#OMP_NUM_THREADS=3
Fct7d=`printf "%07d" "${Fct}"`
Fcst2restrt7d=`printf "%07d" "${Fcst2restrt}"`
ExecCmd1P ${Eta_exe}/${InitBCexec//[[:space:]]} > initbc.out_${Fcst2restrt7d}-${Fct7d} 2>&1
err=$? 
echo value of err is $err 
if [ $err -ne 0 ] ; then
  echo "FALHA!!!!!!! VERIFICAR NO ARQUIVO /exe/initbc.exe"
  exit 1
fi
####################################
# Limpeza
rm -f ${Eta_run}/${CInit}_??????????.???????.ETAwrk
rm -f ${Eta_run}/${BCond}_??????????.???????.ETAwrk
rm -f ${Eta_run}/preproc.bc.???????
rm -f ${Eta_run}/preproc.init

exit 0