[INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /opt/spack/opt/spack/linux-rhel8-zen2/gcc-11.2.0/anaconda3-2022.05-q74p53iarv7fk3uin3xzsgfmov7rqomj [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  CONFIGURACAO DA RODADA   > Resolucao do Modelo :  TQ0299L064  > Resolucao do GSI :  TQ0299L064  > Data Inicial :  2026061400  > Data Final :  2026063018  > Tempo de Previsao :  09  >>> Submetendo o Sistema SMNA_v3.0.0.t12717/SMG para o dia 2026061400   > Executando o GSI  [INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [ OK ] No active Conda environment detected. [ OK ] Running: vars_export  >>>> Carregando arquivos prepBufrs do NCEP  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/14 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : amsuabufrNCEP atmsbufrNCEP gpsrobufrNCEP satwndbufrNCEP [ OK ] link amsuabufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/14/gdas.t00z.1bamua.tm00.bufr_d ] [ OK ] link atmsbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/14/gdas.t00z.atms.tm00.bufr_d ] [ OK ] link gpsrobufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/14/gdas.t00z.gpsro.tm00.bufr_d.nr ] [ OK ] link satwndbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/14/gdas.t00z.satwnd.tm00.bufr_d ]  Found 4 observation files from NCEP to use  >>>> Carregando arquivos prepBufrs do INPE  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/14 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : prepbufrINPE [ OK ] link prepbufrINPE @ [ /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/14/inpe.t00z.prepbufr.nr ]  Found 1 observation files from INPE to use Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061318/GFCTCPT20260613182026061321F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061318/GFCTCPT20260613182026061400F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061318/GFCTCPT20260613182026061403F.fct.TQ0299L064 Copy of Public fixed files cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061318/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061400/satbias_in cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061318/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061400/satbias_pc Entrando no ciclo de BcCycles para 0  Running GSI  using /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/gsiparm.anl to setup GSI run  [ OK ] >>> mergeDiagFiles Merging diag files amsua_metop-b, outer loop 01 [ OK ] Merging diag files amsua_metop-b, outer loop 03 [ OK ] Merging diag files amsua_metop-c, outer loop 01 [ OK ] Merging diag files amsua_metop-c, outer loop 03 [ OK ] Merging diag files atms_n20, outer loop 01 [ OK ] Merging diag files atms_n20, outer loop 03 [ OK ] Merging diag files atms_n21, outer loop 01 [ OK ] Merging diag files atms_n21, outer loop 03 [ OK ] Merging diag files atms_npp, outer loop 01 [ OK ] Merging diag files atms_npp, outer loop 03 [ OK ] Merging diag files conv, outer loop 01 [ OK ] Merging diag files conv, outer loop 03 [ OK ] Merging diag files obs, outer loop setup [ OK ] >>> mergeDiagFiles do diagnostico da radiβncia /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061400/diag_amsua_metop-b_01.2026061400 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061400/diag_amsua_metop-b_03.2026061400 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061400/diag_amsua_metop-c_01.2026061400 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061400/diag_amsua_metop-c_03.2026061400 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061400/diag_atms_n20_01.2026061400 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061400/diag_atms_n20_03.2026061400 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061400/diag_atms_n21_01.2026061400 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061400/diag_atms_n21_03.2026061400 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061400/diag_atms_npp_01.2026061400 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061400/diag_atms_npp_03.2026061400 mv: cannot move '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061400/diag' to '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061400/diag': File exists cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061400/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061400/. cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061400/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061400/. 15 minutes and 36 seconds elapsed.  > Fim do GSI  Testando os dados convencionais do CPTEC se ok: 2026061400 >>>>>>> Verificar dados assimilados.... /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/./runPythonCheck.py:3: DeprecationWarning: You are importing the legacy package 'gsidiag'. This interface is deprecated and will be removed in a future major release. Please migrate to 'readDiag.open.open_diagnostic' and the DiagnosticAPI. import gsidiag as gd 2026-06-25 16:59:37,315 readDiag INFO read_conv_file completed in 1.026s ##### Lendo o arquivo do OMF: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061400/diag_conv_01.2026061400 ##### Lista das variaveis disponiveis no OMF (pfileinfo): Variable Name : ps └── kx => 120 180 181 183 187 Variable Name : t └── kx => 130 180 181 183 187 Variable Name : uv └── kx => 220 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 2026-06-25 16:59:41,442 readDiag INFO read_conv_file completed in 0.879s ##### Lendo o arquivo do OMA: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061400/diag_conv_03.2026061400 ##### Lista das variaveis disponiveis no OMA (pfileinfo): Variable Name : ps └── kx => 120 180 181 183 187 Variable Name : t └── kx => 130 180 181 183 187 Variable Name : uv └── kx => 220 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 ----------------- Fim do teste do Python --------------------  > Executando o MCGA  /bin/bash /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/scripts/run_model.sh 2026061400 2026061409 CPT 299 64 64 No This will run on EGEON Cluster ...[INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >> Submetendo o MCGA: 2026061400  > Resolucao (espectral) :  TQ0299L064  > Resolucao (grade) :  G00450L064   > Condicao Inicial :  2026061400  > Previsao ate :  2026061409  > Pos-proc. Ativado :  no  Running BAM Pre-process for 2026061400  SmoothTopo = .TRUE.  set PREFIX =  SMT [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061400 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [RUN] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [NOT] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [NOT] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [NOT] SSTWeeklyNCEP [NOT] SSTWeekly [NOT] SNOWWeekly [NOT] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [NOT] TopographyGradient [INFO] Procurando an?lise NCEP para: 2026061400 [INFO] Detected: EGEON Cluster [INFO] Caminhos de busca: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain:/oper/dados/ioper/tempo/NCEP/input/2026/06/14/00 [INFO] Verificando diret?rio: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain [INFO] Arquivo encontrado: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas.T00Z.atmanl.netcdf.2026061400 ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061400_1782417586  Running Pre-processes at egeon  Running PreBAM  [ OK ] 1st call to runPre. Status: 0  Running BAM Pre-process for 2026061400 [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061400 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [NOT] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [RUN] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [RUN] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [RUN] SSTWeeklyNCEP [RUN] SSTWeekly [NOT] SNOWWeekly [RUN] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [RUN] TopographyGradient [INFO] Detected: EGEON Cluster [INFO] Searching SST on egeon [INFO] Target SST date: 2026061400 [INFO] Attempting SST retrieval (try 0) [INFO] Found file: /oper/dados/ioper/tempo/NCEP/input/2026/06/14/00/rtgssthr_grb_0.083.grib2.20260614 [INFO] Detected GRIB2 format (1 records) [GRIB2 CONVERSION:] SUCCESS [INFO] Detected: EGEON Cluster  Getting Soil Moisture file for: 2026061400 Search 0 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/GL_SM.GPNR.2026061400.vfm ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061400_1782418013  Running Pre-processes at egeon  Running PreBAM  [ OK ] 2nd call to runPre. Status: 0 [INFO] Detected: EGEON Cluster running :: runModel -das -v -np 64 -N 16 -d 8 -t 299 -l 64 -I 2026061400 -F 2026061409 -W 2026061409 -px CPT -py CPT -s sstwkl -ts 3 -r -tr 6 -i -3 -s sstwkl [INFO] Detected: EGEON Cluster  Running BAM  [ OK ] 8 minutes and 5 seconds elapsed.  > Fim do MCGA   >>> Submetendo o Sistema SMNA_v3.0.0.t12717/SMG para o dia 2026061406   > Executando o GSI  [INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >>>> Carregando arquivos prepBufrs do NCEP  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/14 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : amsuabufrNCEP atmsbufrNCEP gpsrobufrNCEP satwndbufrNCEP [ OK ] link amsuabufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/14/gdas.t06z.1bamua.tm00.bufr_d ] [ OK ] link atmsbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/14/gdas.t06z.atms.tm00.bufr_d ] [ OK ] link gpsrobufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/14/gdas.t06z.gpsro.tm00.bufr_d.nr ] [ OK ] link satwndbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/14/gdas.t06z.satwnd.tm00.bufr_d ]  Found 4 observation files from NCEP to use  >>>> Carregando arquivos prepBufrs do INPE  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/14 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : prepbufrINPE [ OK ] link prepbufrINPE @ [ /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/14/inpe.t06z.prepbufr.nr ]  Found 1 observation files from INPE to use Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061400/GFCTCPT20260614002026061403F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061400/GFCTCPT20260614002026061406F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061400/GFCTCPT20260614002026061409F.fct.TQ0299L064 Copy of Public fixed files cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061400/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061406/satbias_in cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061400/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061406/satbias_pc Entrando no ciclo de BcCycles para 0  Running GSI  using /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/gsiparm.anl to setup GSI run  [ OK ] >>> mergeDiagFiles Merging diag files amsua_metop-b, outer loop 01 [ OK ] Merging diag files amsua_metop-b, outer loop 03 [ OK ] Merging diag files amsua_metop-c, outer loop 01 [ OK ] Merging diag files amsua_metop-c, outer loop 03 [ OK ] Merging diag files atms_n20, outer loop 01 [ OK ] Merging diag files atms_n20, outer loop 03 [ OK ] Merging diag files atms_n21, outer loop 01 [ OK ] Merging diag files atms_n21, outer loop 03 [ OK ] Merging diag files atms_npp, outer loop 01 [ OK ] Merging diag files atms_npp, outer loop 03 [ OK ] Merging diag files conv, outer loop 01 [ OK ] Merging diag files conv, outer loop 03 [ OK ] Merging diag files obs, outer loop setup [ OK ] >>> mergeDiagFiles do diagnostico da radiβncia /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061406/diag_amsua_metop-b_01.2026061406 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061406/diag_amsua_metop-b_03.2026061406 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061406/diag_amsua_metop-c_01.2026061406 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061406/diag_amsua_metop-c_03.2026061406 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061406/diag_atms_n20_01.2026061406 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061406/diag_atms_n20_03.2026061406 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061406/diag_atms_n21_01.2026061406 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061406/diag_atms_n21_03.2026061406 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061406/diag_atms_npp_01.2026061406 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061406/diag_atms_npp_03.2026061406 mv: cannot move '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061406/diag' to '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061406/diag': File exists cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061406/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061406/. cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061406/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061406/. 13 minutes and 30 seconds elapsed.  > Fim do GSI  Testando os dados convencionais do CPTEC se ok: 2026061406 >>>>>>> Verificar dados assimilados.... /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/./runPythonCheck.py:3: DeprecationWarning: You are importing the legacy package 'gsidiag'. This interface is deprecated and will be removed in a future major release. Please migrate to 'readDiag.open.open_diagnostic' and the DiagnosticAPI. import gsidiag as gd 2026-06-25 17:21:22,847 readDiag INFO read_conv_file completed in 0.950s ##### Lendo o arquivo do OMF: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061406/diag_conv_01.2026061406 ##### Lista das variaveis disponiveis no OMF (pfileinfo): Variable Name : ps └── kx => 120 180 181 183 187 Variable Name : t └── kx => 130 180 181 183 187 Variable Name : uv └── kx => 220 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 267 269 750 751 753 754 755 825 2026-06-25 17:21:26,862 readDiag INFO read_conv_file completed in 0.838s ##### Lendo o arquivo do OMA: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061406/diag_conv_03.2026061406 ##### Lista das variaveis disponiveis no OMA (pfileinfo): Variable Name : ps └── kx => 120 180 181 183 187 Variable Name : t └── kx => 130 180 181 183 187 Variable Name : uv └── kx => 220 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 267 269 750 751 753 754 755 825 ----------------- Fim do teste do Python --------------------  > Executando o MCGA  /bin/bash /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/scripts/run_model.sh 2026061406 2026061415 CPT 299 64 64 No This will run on EGEON Cluster ...[INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >> Submetendo o MCGA: 2026061406  > Resolucao (espectral) :  TQ0299L064  > Resolucao (grade) :  G00450L064   > Condicao Inicial :  2026061406  > Previsao ate :  2026061415  > Pos-proc. Ativado :  no  Running BAM Pre-process for 2026061406  SmoothTopo = .TRUE.  set PREFIX =  SMT [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061406 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [RUN] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [NOT] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [NOT] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [NOT] SSTWeeklyNCEP [NOT] SSTWeekly [NOT] SNOWWeekly [NOT] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [NOT] TopographyGradient [INFO] Procurando an?lise NCEP para: 2026061406 [INFO] Detected: EGEON Cluster [INFO] Caminhos de busca: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain:/oper/dados/ioper/tempo/NCEP/input/2026/06/14/06 [INFO] Verificando diret?rio: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain [INFO] Arquivo encontrado: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas.T06Z.atmanl.netcdf.2026061406 ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061406_1782418891  Running Pre-processes at egeon  Running PreBAM  [ OK ] 1st call to runPre. Status: 0  Running BAM Pre-process for 2026061406 [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061406 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [NOT] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [RUN] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [RUN] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [RUN] SSTWeeklyNCEP [RUN] SSTWeekly [NOT] SNOWWeekly [RUN] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [RUN] TopographyGradient [INFO] Detected: EGEON Cluster [INFO] Searching SST on egeon [INFO] Target SST date: 2026061406 [INFO] Attempting SST retrieval (try 0) [FAIL: No valid SST file found for 2026061406] [INFO] Trying earlier time step: 2026061400 [INFO] Checking if SST was previously converted... [INFO] Reusing previous SST file: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas1.T00Z.sstgrd.2026061400 [INFO] Detected: EGEON Cluster  Getting Soil Moisture file for: 2026061406 Search 0 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/GL_SM.GPNR.2026061406.vfm ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061406_1782419317  Running Pre-processes at egeon  Running PreBAM  [ OK ] 2nd call to runPre. Status: 0 [INFO] Detected: EGEON Cluster running :: runModel -das -v -np 64 -N 16 -d 8 -t 299 -l 64 -I 2026061406 -F 2026061415 -W 2026061415 -px CPT -py CPT -s sstwkl -ts 3 -r -tr 6 -i -3 -s sstwkl [INFO] Detected: EGEON Cluster  Running BAM [ Fail ] 8 minutes and 1 seconds elapsed.  > Fim do MCGA   >>> Submetendo o Sistema SMNA_v3.0.0.t12717/SMG para o dia 2026061412   > Executando o GSI  [INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >>>> Carregando arquivos prepBufrs do NCEP  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/14 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : amsuabufrNCEP atmsbufrNCEP gpsrobufrNCEP satwndbufrNCEP [ OK ] link amsuabufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/14/gdas.t12z.1bamua.tm00.bufr_d ] [ OK ] link atmsbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/14/gdas.t12z.atms.tm00.bufr_d ] [ OK ] link gpsrobufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/14/gdas.t12z.gpsro.tm00.bufr_d.nr ] [ OK ] link satwndbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/14/gdas.t12z.satwnd.tm00.bufr_d ]  Found 4 observation files from NCEP to use  >>>> Carregando arquivos prepBufrs do INPE  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/14 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : prepbufrINPE [ OK ] link prepbufrINPE @ [ /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/14/inpe.t12z.prepbufr.nr ]  Found 1 observation files from INPE to use Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061406/GFCTCPT20260614062026061409F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061406/GFCTCPT20260614062026061412F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061406/GFCTCPT20260614062026061415F.fct.TQ0299L064 Copy of Public fixed files cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061406/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061412/satbias_in cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061406/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061412/satbias_pc Entrando no ciclo de BcCycles para 0  Running GSI  using /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/gsiparm.anl to setup GSI run  [ OK ] >>> mergeDiagFiles Merging diag files amsua_metop-b, outer loop 01 [ OK ] Merging diag files amsua_metop-b, outer loop 03 [ OK ] Merging diag files amsua_metop-c, outer loop 01 [ OK ] Merging diag files amsua_metop-c, outer loop 03 [ OK ] Merging diag files atms_n20, outer loop 01 [ OK ] Merging diag files atms_n20, outer loop 03 [ OK ] Merging diag files atms_n21, outer loop 01 [ OK ] Merging diag files atms_n21, outer loop 03 [ OK ] Merging diag files atms_npp, outer loop 01 [ OK ] Merging diag files atms_npp, outer loop 03 [ OK ] Merging diag files conv, outer loop 01 [ OK ] Merging diag files conv, outer loop 03 [ OK ] Merging diag files obs, outer loop setup [ OK ] >>> mergeDiagFiles do diagnostico da radiβncia /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061412/diag_amsua_metop-b_01.2026061412 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061412/diag_amsua_metop-b_03.2026061412 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061412/diag_amsua_metop-c_01.2026061412 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061412/diag_amsua_metop-c_03.2026061412 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061412/diag_atms_n20_01.2026061412 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061412/diag_atms_n20_03.2026061412 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061412/diag_atms_n21_01.2026061412 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061412/diag_atms_n21_03.2026061412 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061412/diag_atms_npp_01.2026061412 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061412/diag_atms_npp_03.2026061412 mv: cannot move '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061412/diag' to '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061412/diag': File exists cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061412/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061412/. cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061412/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061412/. 14 minutes and 39 seconds elapsed.  > Fim do GSI  Testando os dados convencionais do CPTEC se ok: 2026061412 >>>>>>> Verificar dados assimilados.... /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/./runPythonCheck.py:3: DeprecationWarning: You are importing the legacy package 'gsidiag'. This interface is deprecated and will be removed in a future major release. Please migrate to 'readDiag.open.open_diagnostic' and the DiagnosticAPI. import gsidiag as gd 2026-06-25 17:44:12,614 readDiag INFO read_conv_file completed in 0.776s ##### Lendo o arquivo do OMF: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061412/diag_conv_01.2026061412 ##### Lista das variaveis disponiveis no OMF (pfileinfo): Variable Name : uv └── kx => 240 242 243 244 245 246 247 250 252 253 254 255 260 Variable Name : gps └── kx => 3 5 42 43 44 267 269 750 751 753 754 755 825 2026-06-25 17:44:15,818 readDiag INFO read_conv_file completed in 0.711s ##### Lendo o arquivo do OMA: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061412/diag_conv_03.2026061412 ##### Lista das variaveis disponiveis no OMA (pfileinfo): Variable Name : uv └── kx => 240 242 243 244 245 246 247 250 252 253 254 255 260 Variable Name : gps └── kx => 3 5 42 43 44 267 269 750 751 753 754 755 825 ----------------- Fim do teste do Python --------------------  > Executando o MCGA  /bin/bash /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/scripts/run_model.sh 2026061412 2026061421 CPT 299 64 64 No This will run on EGEON Cluster ...[INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >> Submetendo o MCGA: 2026061412  > Resolucao (espectral) :  TQ0299L064  > Resolucao (grade) :  G00450L064   > Condicao Inicial :  2026061412  > Previsao ate :  2026061421  > Pos-proc. Ativado :  no  Running BAM Pre-process for 2026061412  SmoothTopo = .TRUE.  set PREFIX =  SMT [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061412 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [RUN] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [NOT] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [NOT] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [NOT] SSTWeeklyNCEP [NOT] SSTWeekly [NOT] SNOWWeekly [NOT] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [NOT] TopographyGradient [INFO] Procurando an?lise NCEP para: 2026061412 [INFO] Detected: EGEON Cluster [INFO] Caminhos de busca: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain:/oper/dados/ioper/tempo/NCEP/input/2026/06/14/12 [INFO] Verificando diret?rio: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain [INFO] Arquivo encontrado: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas.T12Z.atmanl.netcdf.2026061412 ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061412_1782420260  Running Pre-processes at egeon  Running PreBAM  [ OK ] 1st call to runPre. Status: 0  Running BAM Pre-process for 2026061412 [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061412 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [NOT] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [RUN] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [RUN] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [RUN] SSTWeeklyNCEP [RUN] SSTWeekly [NOT] SNOWWeekly [RUN] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [RUN] TopographyGradient [INFO] Detected: EGEON Cluster [INFO] Searching SST on egeon [INFO] Target SST date: 2026061412 [INFO] Attempting SST retrieval (try 0) [FAIL: No valid SST file found for 2026061412] [INFO] Trying earlier time step: 2026061406 [INFO] Checking if SST was previously converted... [INFO] Reusing previous SST file: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas1.T06Z.sstgrd.2026061406 [INFO] Detected: EGEON Cluster  Getting Soil Moisture file for: 2026061412 Search 0 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/GL_SM.GPNR.2026061412.vfm ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061412_1782420718  Running Pre-processes at egeon  Running PreBAM  [ OK ] 2nd call to runPre. Status: 0 [INFO] Detected: EGEON Cluster running :: runModel -das -v -np 64 -N 16 -d 8 -t 299 -l 64 -I 2026061412 -F 2026061421 -W 2026061421 -px CPT -py CPT -s sstwkl -ts 3 -r -tr 6 -i -3 -s sstwkl [INFO] Detected: EGEON Cluster  Running BAM [ Fail ] 8 minutes and 33 seconds elapsed.  > Fim do MCGA   >>> Submetendo o Sistema SMNA_v3.0.0.t12717/SMG para o dia 2026061418   > Executando o GSI  [INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >>>> Carregando arquivos prepBufrs do NCEP  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/14 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : amsuabufrNCEP atmsbufrNCEP gpsrobufrNCEP satwndbufrNCEP [ OK ] link amsuabufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/14/gdas.t18z.1bamua.tm00.bufr_d ] [ OK ] link atmsbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/14/gdas.t18z.atms.tm00.bufr_d ] [ OK ] link gpsrobufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/14/gdas.t18z.gpsro.tm00.bufr_d.nr ] [ OK ] link satwndbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/14/gdas.t18z.satwnd.tm00.bufr_d ]  Found 4 observation files from NCEP to use  >>>> Carregando arquivos prepBufrs do INPE  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/14 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : prepbufrINPE [ OK ] link prepbufrINPE @ [ /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/14/inpe.t18z.prepbufr.nr ]  Found 1 observation files from INPE to use Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061412/GFCTCPT20260614122026061415F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061412/GFCTCPT20260614122026061418F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061412/GFCTCPT20260614122026061421F.fct.TQ0299L064 Copy of Public fixed files cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061412/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061418/satbias_in cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061412/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061418/satbias_pc Entrando no ciclo de BcCycles para 0  Running GSI  using /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/gsiparm.anl to setup GSI run  [ OK ] >>> mergeDiagFiles Merging diag files amsua_metop-b, outer loop 01 [ OK ] Merging diag files amsua_metop-b, outer loop 03 [ OK ] Merging diag files amsua_metop-c, outer loop 01 [ OK ] Merging diag files amsua_metop-c, outer loop 03 [ OK ] Merging diag files atms_n20, outer loop 01 [ OK ] Merging diag files atms_n20, outer loop 03 [ OK ] Merging diag files atms_n21, outer loop 01 [ OK ] Merging diag files atms_n21, outer loop 03 [ OK ] Merging diag files atms_npp, outer loop 01 [ OK ] Merging diag files atms_npp, outer loop 03 [ OK ] Merging diag files conv, outer loop 01 [ OK ] Merging diag files conv, outer loop 03 [ OK ] Merging diag files obs, outer loop setup [ OK ] >>> mergeDiagFiles do diagnostico da radiβncia /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061418/diag_amsua_metop-b_01.2026061418 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061418/diag_amsua_metop-b_03.2026061418 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061418/diag_amsua_metop-c_01.2026061418 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061418/diag_amsua_metop-c_03.2026061418 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061418/diag_atms_n20_01.2026061418 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061418/diag_atms_n20_03.2026061418 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061418/diag_atms_n21_01.2026061418 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061418/diag_atms_n21_03.2026061418 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061418/diag_atms_npp_01.2026061418 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061418/diag_atms_npp_03.2026061418 mv: cannot move '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061418/diag' to '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061418/diag': File exists cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061418/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061418/. cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061418/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061418/. 14 minutes and 2 seconds elapsed.  > Fim do GSI  Testando os dados convencionais do CPTEC se ok: 2026061418 >>>>>>> Verificar dados assimilados.... /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/./runPythonCheck.py:3: DeprecationWarning: You are importing the legacy package 'gsidiag'. This interface is deprecated and will be removed in a future major release. Please migrate to 'readDiag.open.open_diagnostic' and the DiagnosticAPI. import gsidiag as gd 2026-06-25 18:06:56,255 readDiag INFO read_conv_file completed in 0.763s ##### Lendo o arquivo do OMF: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061418/diag_conv_01.2026061418 ##### Lista das variaveis disponiveis no OMF (pfileinfo): Variable Name : uv └── kx => 240 242 243 244 245 246 247 250 252 253 254 255 260 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 2026-06-25 18:06:59,343 readDiag INFO read_conv_file completed in 0.680s ##### Lendo o arquivo do OMA: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061418/diag_conv_03.2026061418 ##### Lista das variaveis disponiveis no OMA (pfileinfo): Variable Name : uv └── kx => 240 242 243 244 245 246 247 250 252 253 254 255 260 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 ----------------- Fim do teste do Python --------------------  > Executando o MCGA  /bin/bash /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/scripts/run_model.sh 2026061418 2026061503 CPT 299 64 64 No This will run on EGEON Cluster ...[INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >> Submetendo o MCGA: 2026061418  > Resolucao (espectral) :  TQ0299L064  > Resolucao (grade) :  G00450L064   > Condicao Inicial :  2026061418  > Previsao ate :  2026061503  > Pos-proc. Ativado :  no  Running BAM Pre-process for 2026061418  SmoothTopo = .TRUE.  set PREFIX =  SMT [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061418 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [RUN] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [NOT] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [NOT] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [NOT] SSTWeeklyNCEP [NOT] SSTWeekly [NOT] SNOWWeekly [NOT] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [NOT] TopographyGradient [INFO] Procurando an?lise NCEP para: 2026061418 [INFO] Detected: EGEON Cluster [INFO] Caminhos de busca: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain:/oper/dados/ioper/tempo/NCEP/input/2026/06/14/18 [INFO] Verificando diret?rio: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain [INFO] Arquivo encontrado: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas.T18Z.atmanl.netcdf.2026061418 ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061418_1782421623  Running Pre-processes at egeon  Running PreBAM  [ OK ] 1st call to runPre. Status: 0  Running BAM Pre-process for 2026061418 [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061418 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [NOT] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [RUN] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [RUN] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [RUN] SSTWeeklyNCEP [RUN] SSTWeekly [NOT] SNOWWeekly [RUN] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [RUN] TopographyGradient [INFO] Detected: EGEON Cluster [INFO] Searching SST on egeon [INFO] Target SST date: 2026061418 [INFO] Attempting SST retrieval (try 0) [FAIL: No valid SST file found for 2026061418] [INFO] Trying earlier time step: 2026061412 [INFO] Checking if SST was previously converted... [INFO] Reusing previous SST file: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas1.T12Z.sstgrd.2026061412 [INFO] Detected: EGEON Cluster  Getting Soil Moisture file for: 2026061418 Search 0 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/GL_SM.GPNR.2026061418.vfm ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061418_1782422082  Running Pre-processes at egeon  Running PreBAM  [ OK ] 2nd call to runPre. Status: 0 [INFO] Detected: EGEON Cluster running :: runModel -das -v -np 64 -N 16 -d 8 -t 299 -l 64 -I 2026061418 -F 2026061503 -W 2026061503 -px CPT -py CPT -s sstwkl -ts 3 -r -tr 6 -i -3 -s sstwkl [INFO] Detected: EGEON Cluster  Running BAM  [ OK ] 8 minutes and 33 seconds elapsed.  > Fim do MCGA   >>> Submetendo o Sistema SMNA_v3.0.0.t12717/SMG para o dia 2026061500   > Executando o GSI  [INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >>>> Carregando arquivos prepBufrs do NCEP  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/15 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : amsuabufrNCEP atmsbufrNCEP gpsrobufrNCEP satwndbufrNCEP [ OK ] link amsuabufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/15/gdas.t00z.1bamua.tm00.bufr_d ] [ OK ] link atmsbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/15/gdas.t00z.atms.tm00.bufr_d ] [ OK ] link gpsrobufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/15/gdas.t00z.gpsro.tm00.bufr_d.nr ] [ OK ] link satwndbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/15/gdas.t00z.satwnd.tm00.bufr_d ]  Found 4 observation files from NCEP to use  >>>> Carregando arquivos prepBufrs do INPE  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/15 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : prepbufrINPE [ OK ] link prepbufrINPE @ [ /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/15/inpe.t00z.prepbufr.nr ]  Found 1 observation files from INPE to use Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061418/GFCTCPT20260614182026061421F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061418/GFCTCPT20260614182026061500F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061418/GFCTCPT20260614182026061503F.fct.TQ0299L064 Copy of Public fixed files cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061418/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061500/satbias_in cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061418/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061500/satbias_pc Entrando no ciclo de BcCycles para 0  Running GSI  using /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/gsiparm.anl to setup GSI run  [ OK ] >>> mergeDiagFiles Merging diag files amsua_metop-b, outer loop 01 [ OK ] Merging diag files amsua_metop-b, outer loop 03 [ OK ] Merging diag files amsua_metop-c, outer loop 01 [ OK ] Merging diag files amsua_metop-c, outer loop 03 [ OK ] Merging diag files atms_n20, outer loop 01 [ OK ] Merging diag files atms_n20, outer loop 03 [ OK ] Merging diag files atms_n21, outer loop 01 [ OK ] Merging diag files atms_n21, outer loop 03 [ OK ] Merging diag files atms_npp, outer loop 01 [ OK ] Merging diag files atms_npp, outer loop 03 [ OK ] Merging diag files conv, outer loop 01 [ OK ] Merging diag files conv, outer loop 03 [ OK ] Merging diag files obs, outer loop setup [ OK ] >>> mergeDiagFiles do diagnostico da radiβncia /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061500/diag_amsua_metop-b_01.2026061500 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061500/diag_amsua_metop-b_03.2026061500 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061500/diag_amsua_metop-c_01.2026061500 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061500/diag_amsua_metop-c_03.2026061500 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061500/diag_atms_n20_01.2026061500 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061500/diag_atms_n20_03.2026061500 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061500/diag_atms_n21_01.2026061500 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061500/diag_atms_n21_03.2026061500 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061500/diag_atms_npp_01.2026061500 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061500/diag_atms_npp_03.2026061500 mv: cannot move '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061500/diag' to '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061500/diag': File exists cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061500/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061500/. cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061500/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061500/. 15 minutes and 7 seconds elapsed.  > Fim do GSI  Testando os dados convencionais do CPTEC se ok: 2026061500 >>>>>>> Verificar dados assimilados.... /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/./runPythonCheck.py:3: DeprecationWarning: You are importing the legacy package 'gsidiag'. This interface is deprecated and will be removed in a future major release. Please migrate to 'readDiag.open.open_diagnostic' and the DiagnosticAPI. import gsidiag as gd 2026-06-25 18:30:45,081 readDiag INFO read_conv_file completed in 0.911s ##### Lendo o arquivo do OMF: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061500/diag_conv_01.2026061500 ##### Lista das variaveis disponiveis no OMF (pfileinfo): Variable Name : ps └── kx => 120 180 181 183 187 Variable Name : t └── kx => 130 180 181 183 187 Variable Name : uv └── kx => 220 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 2026-06-25 18:30:48,943 readDiag INFO read_conv_file completed in 0.864s ##### Lendo o arquivo do OMA: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061500/diag_conv_03.2026061500 ##### Lista das variaveis disponiveis no OMA (pfileinfo): Variable Name : ps └── kx => 120 180 181 183 187 Variable Name : t └── kx => 130 180 181 183 187 Variable Name : uv └── kx => 220 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 ----------------- Fim do teste do Python --------------------  > Executando o MCGA  /bin/bash /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/scripts/run_model.sh 2026061500 2026061509 CPT 299 64 64 No This will run on EGEON Cluster ...[INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >> Submetendo o MCGA: 2026061500  > Resolucao (espectral) :  TQ0299L064  > Resolucao (grade) :  G00450L064   > Condicao Inicial :  2026061500  > Previsao ate :  2026061509  > Pos-proc. Ativado :  no  Running BAM Pre-process for 2026061500  SmoothTopo = .TRUE.  set PREFIX =  SMT [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061500 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [RUN] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [NOT] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [NOT] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [NOT] SSTWeeklyNCEP [NOT] SSTWeekly [NOT] SNOWWeekly [NOT] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [NOT] TopographyGradient [INFO] Procurando an?lise NCEP para: 2026061500 [INFO] Detected: EGEON Cluster [INFO] Caminhos de busca: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain:/oper/dados/ioper/tempo/NCEP/input/2026/06/15/00 [INFO] Verificando diret?rio: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain [INFO] Arquivo encontrado: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas.T00Z.atmanl.netcdf.2026061500 ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061500_1782423053  Running Pre-processes at egeon  Running PreBAM  [ OK ] 1st call to runPre. Status: 0  Running BAM Pre-process for 2026061500 [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061500 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [NOT] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [RUN] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [RUN] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [RUN] SSTWeeklyNCEP [RUN] SSTWeekly [NOT] SNOWWeekly [RUN] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [RUN] TopographyGradient [INFO] Detected: EGEON Cluster [INFO] Searching SST on egeon [INFO] Target SST date: 2026061500 [INFO] Attempting SST retrieval (try 0) [INFO] Found file: /oper/dados/ioper/tempo/NCEP/input/2026/06/15/00/rtgssthr_grb_0.083.grib2.20260615 [INFO] Detected GRIB2 format (1 records) [GRIB2 CONVERSION:] SUCCESS [INFO] Detected: EGEON Cluster  Getting Soil Moisture file for: 2026061500 Search 0 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/GL_SM.GPNR.2026061500.vfm ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061500_1782423480  Running Pre-processes at egeon  Running PreBAM  [ OK ] 2nd call to runPre. Status: 0 [INFO] Detected: EGEON Cluster running :: runModel -das -v -np 64 -N 16 -d 8 -t 299 -l 64 -I 2026061500 -F 2026061509 -W 2026061509 -px CPT -py CPT -s sstwkl -ts 3 -r -tr 6 -i -3 -s sstwkl [INFO] Detected: EGEON Cluster  Running BAM  [ OK ] 8 minutes and 5 seconds elapsed.  > Fim do MCGA   >>> Submetendo o Sistema SMNA_v3.0.0.t12717/SMG para o dia 2026061506   > Executando o GSI  [INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >>>> Carregando arquivos prepBufrs do NCEP  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/15 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : amsuabufrNCEP atmsbufrNCEP gpsrobufrNCEP satwndbufrNCEP [ OK ] link amsuabufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/15/gdas.t06z.1bamua.tm00.bufr_d ] [ OK ] link atmsbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/15/gdas.t06z.atms.tm00.bufr_d ] [ OK ] link gpsrobufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/15/gdas.t06z.gpsro.tm00.bufr_d.nr ] [ OK ] link satwndbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/15/gdas.t06z.satwnd.tm00.bufr_d ]  Found 4 observation files from NCEP to use  >>>> Carregando arquivos prepBufrs do INPE  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/15 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : prepbufrINPE [ OK ] link prepbufrINPE @ [ /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/15/inpe.t06z.prepbufr.nr ]  Found 1 observation files from INPE to use Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061500/GFCTCPT20260615002026061503F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061500/GFCTCPT20260615002026061506F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061500/GFCTCPT20260615002026061509F.fct.TQ0299L064 Copy of Public fixed files cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061500/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061506/satbias_in cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061500/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061506/satbias_pc Entrando no ciclo de BcCycles para 0  Running GSI  using /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/gsiparm.anl to setup GSI run  [ OK ] >>> mergeDiagFiles Merging diag files amsua_metop-b, outer loop 01 [ OK ] Merging diag files amsua_metop-b, outer loop 03 [ OK ] Merging diag files amsua_metop-c, outer loop 01 [ OK ] Merging diag files amsua_metop-c, outer loop 03 [ OK ] Merging diag files atms_n20, outer loop 01 [ OK ] Merging diag files atms_n20, outer loop 03 [ OK ] Merging diag files atms_n21, outer loop 01 [ OK ] Merging diag files atms_n21, outer loop 03 [ OK ] Merging diag files atms_npp, outer loop 01 [ OK ] Merging diag files atms_npp, outer loop 03 [ OK ] Merging diag files conv, outer loop 01 [ OK ] Merging diag files conv, outer loop 03 [ OK ] Merging diag files obs, outer loop setup [ OK ] >>> mergeDiagFiles do diagnostico da radiβncia /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061506/diag_amsua_metop-b_01.2026061506 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061506/diag_amsua_metop-b_03.2026061506 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061506/diag_amsua_metop-c_01.2026061506 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061506/diag_amsua_metop-c_03.2026061506 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061506/diag_atms_n20_01.2026061506 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061506/diag_atms_n20_03.2026061506 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061506/diag_atms_n21_01.2026061506 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061506/diag_atms_n21_03.2026061506 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061506/diag_atms_npp_01.2026061506 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061506/diag_atms_npp_03.2026061506 mv: cannot move '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061506/diag' to '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061506/diag': File exists cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061506/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061506/. cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061506/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061506/. 13 minutes and 32 seconds elapsed.  > Fim do GSI  Testando os dados convencionais do CPTEC se ok: 2026061506 >>>>>>> Verificar dados assimilados.... /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/./runPythonCheck.py:3: DeprecationWarning: You are importing the legacy package 'gsidiag'. This interface is deprecated and will be removed in a future major release. Please migrate to 'readDiag.open.open_diagnostic' and the DiagnosticAPI. import gsidiag as gd 2026-06-25 18:52:33,185 readDiag INFO read_conv_file completed in 0.951s ##### Lendo o arquivo do OMF: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061506/diag_conv_01.2026061506 ##### Lista das variaveis disponiveis no OMF (pfileinfo): Variable Name : ps └── kx => 120 180 181 183 187 Variable Name : t └── kx => 130 180 181 183 187 Variable Name : uv └── kx => 220 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 2026-06-25 18:52:37,039 readDiag INFO read_conv_file completed in 0.836s ##### Lendo o arquivo do OMA: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061506/diag_conv_03.2026061506 ##### Lista das variaveis disponiveis no OMA (pfileinfo): Variable Name : ps └── kx => 120 180 181 183 187 Variable Name : t └── kx => 130 180 181 183 187 Variable Name : uv └── kx => 220 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 ----------------- Fim do teste do Python --------------------  > Executando o MCGA  /bin/bash /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/scripts/run_model.sh 2026061506 2026061515 CPT 299 64 64 No This will run on EGEON Cluster ...[INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >> Submetendo o MCGA: 2026061506  > Resolucao (espectral) :  TQ0299L064  > Resolucao (grade) :  G00450L064   > Condicao Inicial :  2026061506  > Previsao ate :  2026061515  > Pos-proc. Ativado :  no  Running BAM Pre-process for 2026061506  SmoothTopo = .TRUE.  set PREFIX =  SMT [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061506 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [RUN] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [NOT] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [NOT] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [NOT] SSTWeeklyNCEP [NOT] SSTWeekly [NOT] SNOWWeekly [NOT] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [NOT] TopographyGradient [INFO] Procurando an?lise NCEP para: 2026061506 [INFO] Detected: EGEON Cluster [INFO] Caminhos de busca: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain:/oper/dados/ioper/tempo/NCEP/input/2026/06/15/06 [INFO] Verificando diret?rio: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain [INFO] Arquivo encontrado: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas.T06Z.atmanl.netcdf.2026061506 ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061506_1782424368  Running Pre-processes at egeon  Running PreBAM  [ OK ] 1st call to runPre. Status: 0  Running BAM Pre-process for 2026061506 [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061506 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [NOT] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [RUN] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [RUN] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [RUN] SSTWeeklyNCEP [RUN] SSTWeekly [NOT] SNOWWeekly [RUN] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [RUN] TopographyGradient [INFO] Detected: EGEON Cluster [INFO] Searching SST on egeon [INFO] Target SST date: 2026061506 [INFO] Attempting SST retrieval (try 0) [FAIL: No valid SST file found for 2026061506] [INFO] Trying earlier time step: 2026061500 [INFO] Checking if SST was previously converted... [INFO] Reusing previous SST file: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas1.T00Z.sstgrd.2026061500 [INFO] Detected: EGEON Cluster  Getting Soil Moisture file for: 2026061506 Search 0 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/GL_SM.GPNR.2026061506.vfm ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061506_1782424795  Running Pre-processes at egeon  Running PreBAM  [ OK ] 2nd call to runPre. Status: 0 [INFO] Detected: EGEON Cluster running :: runModel -das -v -np 64 -N 16 -d 8 -t 299 -l 64 -I 2026061506 -F 2026061515 -W 2026061515 -px CPT -py CPT -s sstwkl -ts 3 -r -tr 6 -i -3 -s sstwkl [INFO] Detected: EGEON Cluster  Running BAM  [ OK ] 8 minutes and 2 seconds elapsed.  > Fim do MCGA   >>> Submetendo o Sistema SMNA_v3.0.0.t12717/SMG para o dia 2026061512   > Executando o GSI  [INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >>>> Carregando arquivos prepBufrs do NCEP  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/15 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : amsuabufrNCEP atmsbufrNCEP gpsrobufrNCEP satwndbufrNCEP [ OK ] link amsuabufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/15/gdas.t12z.1bamua.tm00.bufr_d ] [ OK ] link atmsbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/15/gdas.t12z.atms.tm00.bufr_d ] [ OK ] link gpsrobufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/15/gdas.t12z.gpsro.tm00.bufr_d.nr ] [ OK ] link satwndbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/15/gdas.t12z.satwnd.tm00.bufr_d ]  Found 4 observation files from NCEP to use  >>>> Carregando arquivos prepBufrs do INPE  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/15 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : prepbufrINPE [ OK ] link prepbufrINPE @ [ /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/15/inpe.t12z.prepbufr.nr ]  Found 1 observation files from INPE to use Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061506/GFCTCPT20260615062026061509F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061506/GFCTCPT20260615062026061512F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061506/GFCTCPT20260615062026061515F.fct.TQ0299L064 Copy of Public fixed files cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061506/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061512/satbias_in cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061506/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061512/satbias_pc Entrando no ciclo de BcCycles para 0  Running GSI  using /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/gsiparm.anl to setup GSI run  [ OK ] >>> mergeDiagFiles Merging diag files amsua_metop-b, outer loop 01 [ OK ] Merging diag files amsua_metop-b, outer loop 03 [ OK ] Merging diag files amsua_metop-c, outer loop 01 [ OK ] Merging diag files amsua_metop-c, outer loop 03 [ OK ] Merging diag files atms_n20, outer loop 01 [ OK ] Merging diag files atms_n20, outer loop 03 [ OK ] Merging diag files atms_n21, outer loop 01 [ OK ] Merging diag files atms_n21, outer loop 03 [ OK ] Merging diag files atms_npp, outer loop 01 [ OK ] Merging diag files atms_npp, outer loop 03 [ OK ] Merging diag files conv, outer loop 01 [ OK ] Merging diag files conv, outer loop 03 [ OK ] Merging diag files obs, outer loop setup [ OK ] >>> mergeDiagFiles do diagnostico da radiβncia /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061512/diag_amsua_metop-b_01.2026061512 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061512/diag_amsua_metop-b_03.2026061512 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061512/diag_amsua_metop-c_01.2026061512 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061512/diag_amsua_metop-c_03.2026061512 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061512/diag_atms_n20_01.2026061512 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061512/diag_atms_n20_03.2026061512 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061512/diag_atms_n21_01.2026061512 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061512/diag_atms_n21_03.2026061512 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061512/diag_atms_npp_01.2026061512 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061512/diag_atms_npp_03.2026061512 mv: cannot move '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061512/diag' to '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061512/diag': File exists cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061512/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061512/. cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061512/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061512/. 15 minutes and 37 seconds elapsed.  > Fim do GSI  Testando os dados convencionais do CPTEC se ok: 2026061512 >>>>>>> Verificar dados assimilados.... /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/./runPythonCheck.py:3: DeprecationWarning: You are importing the legacy package 'gsidiag'. This interface is deprecated and will be removed in a future major release. Please migrate to 'readDiag.open.open_diagnostic' and the DiagnosticAPI. import gsidiag as gd 2026-06-25 19:16:31,139 readDiag INFO read_conv_file completed in 0.835s ##### Lendo o arquivo do OMF: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061512/diag_conv_01.2026061512 ##### Lista das variaveis disponiveis no OMF (pfileinfo): Variable Name : uv └── kx => 240 242 243 244 245 246 247 250 252 253 254 255 260 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 2026-06-25 19:16:34,470 readDiag INFO read_conv_file completed in 0.789s ##### Lendo o arquivo do OMA: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061512/diag_conv_03.2026061512 ##### Lista das variaveis disponiveis no OMA (pfileinfo): Variable Name : uv └── kx => 240 242 243 244 245 246 247 250 252 253 254 255 260 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 ----------------- Fim do teste do Python --------------------  > Executando o MCGA  /bin/bash /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/scripts/run_model.sh 2026061512 2026061521 CPT 299 64 64 No This will run on EGEON Cluster ...[INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >> Submetendo o MCGA: 2026061512  > Resolucao (espectral) :  TQ0299L064  > Resolucao (grade) :  G00450L064   > Condicao Inicial :  2026061512  > Previsao ate :  2026061521  > Pos-proc. Ativado :  no  Running BAM Pre-process for 2026061512  SmoothTopo = .TRUE.  set PREFIX =  SMT [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061512 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [RUN] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [NOT] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [NOT] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [NOT] SSTWeeklyNCEP [NOT] SSTWeekly [NOT] SNOWWeekly [NOT] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [NOT] TopographyGradient [INFO] Procurando an?lise NCEP para: 2026061512 [INFO] Detected: EGEON Cluster [INFO] Caminhos de busca: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain:/oper/dados/ioper/tempo/NCEP/input/2026/06/15/12 [INFO] Verificando diret?rio: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain [INFO] Arquivo encontrado: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas.T12Z.atmanl.netcdf.2026061512 ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061512_1782425798  Running Pre-processes at egeon  Running PreBAM  [ OK ] 1st call to runPre. Status: 0  Running BAM Pre-process for 2026061512 [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061512 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [NOT] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [RUN] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [RUN] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [RUN] SSTWeeklyNCEP [RUN] SSTWeekly [NOT] SNOWWeekly [RUN] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [RUN] TopographyGradient [INFO] Detected: EGEON Cluster [INFO] Searching SST on egeon [INFO] Target SST date: 2026061512 [INFO] Attempting SST retrieval (try 0) [FAIL: No valid SST file found for 2026061512] [INFO] Trying earlier time step: 2026061506 [INFO] Checking if SST was previously converted... [INFO] Reusing previous SST file: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas1.T06Z.sstgrd.2026061506 [INFO] Detected: EGEON Cluster  Getting Soil Moisture file for: 2026061512 Search 0 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/GL_SM.GPNR.2026061512.vfm ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061512_1782426225  Running Pre-processes at egeon  Running PreBAM  [ OK ] 2nd call to runPre. Status: 0 [INFO] Detected: EGEON Cluster running :: runModel -das -v -np 64 -N 16 -d 8 -t 299 -l 64 -I 2026061512 -F 2026061521 -W 2026061521 -px CPT -py CPT -s sstwkl -ts 3 -r -tr 6 -i -3 -s sstwkl [INFO] Detected: EGEON Cluster  Running BAM [ Fail ] 8 minutes and 1 seconds elapsed.  > Fim do MCGA   >>> Submetendo o Sistema SMNA_v3.0.0.t12717/SMG para o dia 2026061518   > Executando o GSI  [INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >>>> Carregando arquivos prepBufrs do NCEP  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/15 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : amsuabufrNCEP atmsbufrNCEP gpsrobufrNCEP satwndbufrNCEP [ OK ] link amsuabufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/15/gdas.t18z.1bamua.tm00.bufr_d ] [ OK ] link atmsbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/15/gdas.t18z.atms.tm00.bufr_d ] [ OK ] link gpsrobufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/15/gdas.t18z.gpsro.tm00.bufr_d.nr ] [ OK ] link satwndbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/15/gdas.t18z.satwnd.tm00.bufr_d ]  Found 4 observation files from NCEP to use  >>>> Carregando arquivos prepBufrs do INPE  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/15 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : prepbufrINPE [ OK ] link prepbufrINPE @ [ /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/15/inpe.t18z.prepbufr.nr ]  Found 1 observation files from INPE to use Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061512/GFCTCPT20260615122026061515F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061512/GFCTCPT20260615122026061518F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061512/GFCTCPT20260615122026061521F.fct.TQ0299L064 Copy of Public fixed files cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061512/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061518/satbias_in cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061512/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061518/satbias_pc Entrando no ciclo de BcCycles para 0  Running GSI  using /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/gsiparm.anl to setup GSI run  [ OK ] >>> mergeDiagFiles Merging diag files amsua_metop-b, outer loop 01 [ OK ] Merging diag files amsua_metop-b, outer loop 03 [ OK ] Merging diag files amsua_metop-c, outer loop 01 [ OK ] Merging diag files amsua_metop-c, outer loop 03 [ OK ] Merging diag files atms_n20, outer loop 01 [ OK ] Merging diag files atms_n20, outer loop 03 [ OK ] Merging diag files atms_n21, outer loop 01 [ OK ] Merging diag files atms_n21, outer loop 03 [ OK ] Merging diag files atms_npp, outer loop 01 [ OK ] Merging diag files atms_npp, outer loop 03 [ OK ] Merging diag files conv, outer loop 01 [ OK ] Merging diag files conv, outer loop 03 [ OK ] Merging diag files obs, outer loop setup [ OK ] >>> mergeDiagFiles do diagnostico da radiβncia /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061518/diag_amsua_metop-b_01.2026061518 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061518/diag_amsua_metop-b_03.2026061518 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061518/diag_amsua_metop-c_01.2026061518 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061518/diag_amsua_metop-c_03.2026061518 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061518/diag_atms_n20_01.2026061518 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061518/diag_atms_n20_03.2026061518 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061518/diag_atms_n21_01.2026061518 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061518/diag_atms_n21_03.2026061518 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061518/diag_atms_npp_01.2026061518 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061518/diag_atms_npp_03.2026061518 mv: cannot move '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061518/diag' to '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061518/diag': File exists cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061518/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061518/. cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061518/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061518/. 14 minutes and 31 seconds elapsed.  > Fim do GSI  Testando os dados convencionais do CPTEC se ok: 2026061518 >>>>>>> Verificar dados assimilados.... /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/./runPythonCheck.py:3: DeprecationWarning: You are importing the legacy package 'gsidiag'. This interface is deprecated and will be removed in a future major release. Please migrate to 'readDiag.open.open_diagnostic' and the DiagnosticAPI. import gsidiag as gd 2026-06-25 19:39:11,976 readDiag INFO read_conv_file completed in 0.918s ##### Lendo o arquivo do OMF: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061518/diag_conv_01.2026061518 ##### Lista das variaveis disponiveis no OMF (pfileinfo): Variable Name : uv └── kx => 240 242 243 244 245 246 247 250 252 253 254 255 260 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 2026-06-25 19:39:15,415 readDiag INFO read_conv_file completed in 0.809s ##### Lendo o arquivo do OMA: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061518/diag_conv_03.2026061518 ##### Lista das variaveis disponiveis no OMA (pfileinfo): Variable Name : uv └── kx => 240 242 243 244 245 246 247 250 252 253 254 255 260 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 ----------------- Fim do teste do Python --------------------  > Executando o MCGA  /bin/bash /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/scripts/run_model.sh 2026061518 2026061603 CPT 299 64 64 No This will run on EGEON Cluster ...[INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >> Submetendo o MCGA: 2026061518  > Resolucao (espectral) :  TQ0299L064  > Resolucao (grade) :  G00450L064   > Condicao Inicial :  2026061518  > Previsao ate :  2026061603  > Pos-proc. Ativado :  no  Running BAM Pre-process for 2026061518  SmoothTopo = .TRUE.  set PREFIX =  SMT [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061518 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [RUN] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [NOT] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [NOT] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [NOT] SSTWeeklyNCEP [NOT] SSTWeekly [NOT] SNOWWeekly [NOT] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [NOT] TopographyGradient [INFO] Procurando an?lise NCEP para: 2026061518 [INFO] Detected: EGEON Cluster [INFO] Caminhos de busca: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain:/oper/dados/ioper/tempo/NCEP/input/2026/06/15/18 [INFO] Verificando diret?rio: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain [INFO] Arquivo encontrado: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas.T18Z.atmanl.netcdf.2026061518 ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061518_1782427159  Running Pre-processes at egeon  Running PreBAM  [ OK ] 1st call to runPre. Status: 0  Running BAM Pre-process for 2026061518 [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061518 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [NOT] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [RUN] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [RUN] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [RUN] SSTWeeklyNCEP [RUN] SSTWeekly [NOT] SNOWWeekly [RUN] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [RUN] TopographyGradient [INFO] Detected: EGEON Cluster [INFO] Searching SST on egeon [INFO] Target SST date: 2026061518 [INFO] Attempting SST retrieval (try 0) [FAIL: No valid SST file found for 2026061518] [INFO] Trying earlier time step: 2026061512 [INFO] Checking if SST was previously converted... [INFO] Reusing previous SST file: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas1.T12Z.sstgrd.2026061512 [INFO] Detected: EGEON Cluster  Getting Soil Moisture file for: 2026061518 Search 0 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/GL_SM.GPNR.2026061518.vfm ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061518_1782427586  Running Pre-processes at egeon  Running PreBAM  [ OK ] 2nd call to runPre. Status: 0 [INFO] Detected: EGEON Cluster running :: runModel -das -v -np 64 -N 16 -d 8 -t 299 -l 64 -I 2026061518 -F 2026061603 -W 2026061603 -px CPT -py CPT -s sstwkl -ts 3 -r -tr 6 -i -3 -s sstwkl [INFO] Detected: EGEON Cluster  Running BAM  [ OK ] 8 minutes and 1 seconds elapsed.  > Fim do MCGA   >>> Submetendo o Sistema SMNA_v3.0.0.t12717/SMG para o dia 2026061600   > Executando o GSI  [INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >>>> Carregando arquivos prepBufrs do NCEP  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/16 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : amsuabufrNCEP atmsbufrNCEP gpsrobufrNCEP satwndbufrNCEP [ OK ] link amsuabufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/16/gdas.t00z.1bamua.tm00.bufr_d ] [ OK ] link atmsbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/16/gdas.t00z.atms.tm00.bufr_d ] [ OK ] link gpsrobufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/16/gdas.t00z.gpsro.tm00.bufr_d.nr ] [ OK ] link satwndbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/16/gdas.t00z.satwnd.tm00.bufr_d ]  Found 4 observation files from NCEP to use  >>>> Carregando arquivos prepBufrs do INPE  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/16 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : prepbufrINPE [ OK ] link prepbufrINPE @ [ /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/16/inpe.t00z.prepbufr.nr ]  Found 1 observation files from INPE to use Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061518/GFCTCPT20260615182026061521F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061518/GFCTCPT20260615182026061600F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061518/GFCTCPT20260615182026061603F.fct.TQ0299L064 Copy of Public fixed files cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061518/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061600/satbias_in cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061518/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061600/satbias_pc Entrando no ciclo de BcCycles para 0  Running GSI  using /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/gsiparm.anl to setup GSI run  [ OK ] >>> mergeDiagFiles Merging diag files amsua_metop-b, outer loop 01 [ OK ] Merging diag files amsua_metop-b, outer loop 03 [ OK ] Merging diag files amsua_metop-c, outer loop 01 [ OK ] Merging diag files amsua_metop-c, outer loop 03 [ OK ] Merging diag files atms_n20, outer loop 01 [ OK ] Merging diag files atms_n20, outer loop 03 [ OK ] Merging diag files atms_n21, outer loop 01 [ OK ] Merging diag files atms_n21, outer loop 03 [ OK ] Merging diag files atms_npp, outer loop 01 [ OK ] Merging diag files atms_npp, outer loop 03 [ OK ] Merging diag files conv, outer loop 01 [ OK ] Merging diag files conv, outer loop 03 [ OK ] Merging diag files obs, outer loop setup [ OK ] >>> mergeDiagFiles do diagnostico da radiβncia /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061600/diag_amsua_metop-b_01.2026061600 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061600/diag_amsua_metop-b_03.2026061600 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061600/diag_amsua_metop-c_01.2026061600 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061600/diag_amsua_metop-c_03.2026061600 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061600/diag_atms_n20_01.2026061600 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061600/diag_atms_n20_03.2026061600 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061600/diag_atms_n21_01.2026061600 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061600/diag_atms_n21_03.2026061600 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061600/diag_atms_npp_01.2026061600 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061600/diag_atms_npp_03.2026061600 mv: cannot move '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061600/diag' to '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061600/diag': File exists cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061600/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061600/. cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061600/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061600/. 14 minutes and 2 seconds elapsed.  > Fim do GSI  Testando os dados convencionais do CPTEC se ok: 2026061600 >>>>>>> Verificar dados assimilados.... /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/./runPythonCheck.py:3: DeprecationWarning: You are importing the legacy package 'gsidiag'. This interface is deprecated and will be removed in a future major release. Please migrate to 'readDiag.open.open_diagnostic' and the DiagnosticAPI. import gsidiag as gd 2026-06-25 20:01:23,369 readDiag INFO read_conv_file completed in 1.083s ##### Lendo o arquivo do OMF: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061600/diag_conv_01.2026061600 ##### Lista das variaveis disponiveis no OMF (pfileinfo): Variable Name : ps └── kx => 120 180 181 183 187 Variable Name : t └── kx => 130 180 181 183 187 Variable Name : uv └── kx => 220 229 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 2026-06-25 20:01:27,591 readDiag INFO read_conv_file completed in 0.878s ##### Lendo o arquivo do OMA: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061600/diag_conv_03.2026061600 ##### Lista das variaveis disponiveis no OMA (pfileinfo): Variable Name : ps └── kx => 120 180 181 183 187 Variable Name : t └── kx => 130 180 181 183 187 Variable Name : uv └── kx => 220 229 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 ----------------- Fim do teste do Python --------------------  > Executando o MCGA  /bin/bash /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/scripts/run_model.sh 2026061600 2026061609 CPT 299 64 64 No This will run on EGEON Cluster ...[INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >> Submetendo o MCGA: 2026061600  > Resolucao (espectral) :  TQ0299L064  > Resolucao (grade) :  G00450L064   > Condicao Inicial :  2026061600  > Previsao ate :  2026061609  > Pos-proc. Ativado :  no  Running BAM Pre-process for 2026061600  SmoothTopo = .TRUE.  set PREFIX =  SMT [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061600 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [RUN] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [NOT] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [NOT] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [NOT] SSTWeeklyNCEP [NOT] SSTWeekly [NOT] SNOWWeekly [NOT] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [NOT] TopographyGradient [INFO] Procurando an?lise NCEP para: 2026061600 [INFO] Detected: EGEON Cluster [INFO] Caminhos de busca: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain:/oper/dados/ioper/tempo/NCEP/input/2026/06/16/00 [INFO] Verificando diret?rio: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain [INFO] Arquivo encontrado: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas.T00Z.atmanl.netcdf.2026061600 ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061600_1782428493  Running Pre-processes at egeon  Running PreBAM  [ OK ] 1st call to runPre. Status: 0  Running BAM Pre-process for 2026061600 [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061600 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [NOT] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [RUN] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [RUN] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [RUN] SSTWeeklyNCEP [RUN] SSTWeekly [NOT] SNOWWeekly [RUN] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [RUN] TopographyGradient [INFO] Detected: EGEON Cluster [INFO] Searching SST on egeon [INFO] Target SST date: 2026061600 [INFO] Attempting SST retrieval (try 0) [INFO] Found file: /oper/dados/ioper/tempo/NCEP/input/2026/06/16/00/rtgssthr_grb_0.083.grib2.20260616 [INFO] Detected GRIB2 format (1 records) [GRIB2 CONVERSION:] SUCCESS [INFO] Detected: EGEON Cluster  Getting Soil Moisture file for: 2026061600 Search 0 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/GL_SM.GPNR.2026061600.vfm ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061600_1782428919  Running Pre-processes at egeon  Running PreBAM  [ OK ] 2nd call to runPre. Status: 0 [INFO] Detected: EGEON Cluster running :: runModel -das -v -np 64 -N 16 -d 8 -t 299 -l 64 -I 2026061600 -F 2026061609 -W 2026061609 -px CPT -py CPT -s sstwkl -ts 3 -r -tr 6 -i -3 -s sstwkl [INFO] Detected: EGEON Cluster  Running BAM  [ OK ] 8 minutes and 4 seconds elapsed.  > Fim do MCGA   >>> Submetendo o Sistema SMNA_v3.0.0.t12717/SMG para o dia 2026061606   > Executando o GSI  [INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >>>> Carregando arquivos prepBufrs do NCEP  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/16 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : amsuabufrNCEP atmsbufrNCEP gpsrobufrNCEP satwndbufrNCEP [ OK ] link amsuabufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/16/gdas.t06z.1bamua.tm00.bufr_d ] [ OK ] link atmsbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/16/gdas.t06z.atms.tm00.bufr_d ] [ OK ] link gpsrobufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/16/gdas.t06z.gpsro.tm00.bufr_d.nr ] [ OK ] link satwndbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/16/gdas.t06z.satwnd.tm00.bufr_d ]  Found 4 observation files from NCEP to use  >>>> Carregando arquivos prepBufrs do INPE  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/16 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : prepbufrINPE [ OK ] link prepbufrINPE @ [ /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/16/inpe.t06z.prepbufr.nr ]  Found 1 observation files from INPE to use Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061600/GFCTCPT20260616002026061603F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061600/GFCTCPT20260616002026061606F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061600/GFCTCPT20260616002026061609F.fct.TQ0299L064 Copy of Public fixed files cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061600/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061606/satbias_in cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061600/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061606/satbias_pc Entrando no ciclo de BcCycles para 0  Running GSI  using /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/gsiparm.anl to setup GSI run  [ OK ] >>> mergeDiagFiles Merging diag files amsua_metop-b, outer loop 01 [ OK ] Merging diag files amsua_metop-b, outer loop 03 [ OK ] Merging diag files amsua_metop-c, outer loop 01 [ OK ] Merging diag files amsua_metop-c, outer loop 03 [ OK ] Merging diag files atms_n20, outer loop 01 [ OK ] Merging diag files atms_n20, outer loop 03 [ OK ] Merging diag files atms_n21, outer loop 01 [ OK ] Merging diag files atms_n21, outer loop 03 [ OK ] Merging diag files atms_npp, outer loop 01 [ OK ] Merging diag files atms_npp, outer loop 03 [ OK ] Merging diag files conv, outer loop 01 [ OK ] Merging diag files conv, outer loop 03 [ OK ] Merging diag files obs, outer loop setup [ OK ] >>> mergeDiagFiles do diagnostico da radiβncia /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061606/diag_amsua_metop-b_01.2026061606 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061606/diag_amsua_metop-b_03.2026061606 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061606/diag_amsua_metop-c_01.2026061606 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061606/diag_amsua_metop-c_03.2026061606 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061606/diag_atms_n20_01.2026061606 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061606/diag_atms_n20_03.2026061606 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061606/diag_atms_n21_01.2026061606 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061606/diag_atms_n21_03.2026061606 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061606/diag_atms_npp_01.2026061606 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061606/diag_atms_npp_03.2026061606 mv: cannot move '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061606/diag' to '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061606/diag': File exists cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061606/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061606/. cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061606/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061606/. 14 minutes and 4 seconds elapsed.  > Fim do GSI  Testando os dados convencionais do CPTEC se ok: 2026061606 >>>>>>> Verificar dados assimilados.... /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/./runPythonCheck.py:3: DeprecationWarning: You are importing the legacy package 'gsidiag'. This interface is deprecated and will be removed in a future major release. Please migrate to 'readDiag.open.open_diagnostic' and the DiagnosticAPI. import gsidiag as gd 2026-06-25 20:23:42,416 readDiag INFO read_conv_file completed in 0.965s ##### Lendo o arquivo do OMF: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061606/diag_conv_01.2026061606 ##### Lista das variaveis disponiveis no OMF (pfileinfo): Variable Name : ps └── kx => 120 180 181 183 187 Variable Name : t └── kx => 130 180 181 183 187 Variable Name : uv └── kx => 220 229 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 2026-06-25 20:23:46,445 readDiag INFO read_conv_file completed in 0.821s ##### Lendo o arquivo do OMA: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061606/diag_conv_03.2026061606 ##### Lista das variaveis disponiveis no OMA (pfileinfo): Variable Name : ps └── kx => 120 180 181 183 187 Variable Name : t └── kx => 130 180 181 183 187 Variable Name : uv └── kx => 220 229 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 ----------------- Fim do teste do Python --------------------  > Executando o MCGA  /bin/bash /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/scripts/run_model.sh 2026061606 2026061615 CPT 299 64 64 No This will run on EGEON Cluster ...[INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >> Submetendo o MCGA: 2026061606  > Resolucao (espectral) :  TQ0299L064  > Resolucao (grade) :  G00450L064   > Condicao Inicial :  2026061606  > Previsao ate :  2026061615  > Pos-proc. Ativado :  no  Running BAM Pre-process for 2026061606  SmoothTopo = .TRUE.  set PREFIX =  SMT [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061606 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [RUN] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [NOT] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [NOT] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [NOT] SSTWeeklyNCEP [NOT] SSTWeekly [NOT] SNOWWeekly [NOT] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [NOT] TopographyGradient [INFO] Procurando an?lise NCEP para: 2026061606 [INFO] Detected: EGEON Cluster [INFO] Caminhos de busca: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain:/oper/dados/ioper/tempo/NCEP/input/2026/06/16/06 [INFO] Verificando diret?rio: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain [INFO] Arquivo encontrado: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas.T06Z.atmanl.netcdf.2026061606 ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061606_1782429830  Running Pre-processes at egeon  Running PreBAM  [ OK ] 1st call to runPre. Status: 0  Running BAM Pre-process for 2026061606 [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061606 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [NOT] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [RUN] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [RUN] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [RUN] SSTWeeklyNCEP [RUN] SSTWeekly [NOT] SNOWWeekly [RUN] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [RUN] TopographyGradient [INFO] Detected: EGEON Cluster [INFO] Searching SST on egeon [INFO] Target SST date: 2026061606 [INFO] Attempting SST retrieval (try 0) [FAIL: No valid SST file found for 2026061606] [INFO] Trying earlier time step: 2026061600 [INFO] Checking if SST was previously converted... [INFO] Reusing previous SST file: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas1.T00Z.sstgrd.2026061600 [INFO] Detected: EGEON Cluster  Getting Soil Moisture file for: 2026061606 Search 0 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/GL_SM.GPNR.2026061606.vfm ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061606_1782430257  Running Pre-processes at egeon  Running PreBAM  [ OK ] 2nd call to runPre. Status: 0 [INFO] Detected: EGEON Cluster running :: runModel -das -v -np 64 -N 16 -d 8 -t 299 -l 64 -I 2026061606 -F 2026061615 -W 2026061615 -px CPT -py CPT -s sstwkl -ts 3 -r -tr 6 -i -3 -s sstwkl [INFO] Detected: EGEON Cluster  Running BAM  [ OK ] 8 minutes and 0 seconds elapsed.  > Fim do MCGA   >>> Submetendo o Sistema SMNA_v3.0.0.t12717/SMG para o dia 2026061612   > Executando o GSI  [INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >>>> Carregando arquivos prepBufrs do NCEP  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/16 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : amsuabufrNCEP atmsbufrNCEP gpsrobufrNCEP satwndbufrNCEP [ OK ] link amsuabufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/16/gdas.t12z.1bamua.tm00.bufr_d ] [ OK ] link atmsbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/16/gdas.t12z.atms.tm00.bufr_d ] [ OK ] link gpsrobufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/16/gdas.t12z.gpsro.tm00.bufr_d.nr ] [ OK ] link satwndbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/16/gdas.t12z.satwnd.tm00.bufr_d ]  Found 4 observation files from NCEP to use  >>>> Carregando arquivos prepBufrs do INPE  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/16 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : prepbufrINPE [ OK ] link prepbufrINPE @ [ /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/16/inpe.t12z.prepbufr.nr ]  Found 1 observation files from INPE to use Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061606/GFCTCPT20260616062026061609F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061606/GFCTCPT20260616062026061612F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061606/GFCTCPT20260616062026061615F.fct.TQ0299L064 Copy of Public fixed files cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061606/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061612/satbias_in cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061606/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061612/satbias_pc Entrando no ciclo de BcCycles para 0  Running GSI  using /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/gsiparm.anl to setup GSI run  [ OK ] >>> mergeDiagFiles Merging diag files amsua_metop-b, outer loop 01 [ OK ] Merging diag files amsua_metop-b, outer loop 03 [ OK ] Merging diag files amsua_metop-c, outer loop 01 [ OK ] Merging diag files amsua_metop-c, outer loop 03 [ OK ] Merging diag files atms_n20, outer loop 01 [ OK ] Merging diag files atms_n20, outer loop 03 [ OK ] Merging diag files atms_n21, outer loop 01 [ OK ] Merging diag files atms_n21, outer loop 03 [ OK ] Merging diag files atms_npp, outer loop 01 [ OK ] Merging diag files atms_npp, outer loop 03 [ OK ] Merging diag files conv, outer loop 01 [ OK ] Merging diag files conv, outer loop 03 [ OK ] Merging diag files obs, outer loop setup [ OK ] >>> mergeDiagFiles do diagnostico da radiβncia /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061612/diag_amsua_metop-b_01.2026061612 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061612/diag_amsua_metop-b_03.2026061612 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061612/diag_amsua_metop-c_01.2026061612 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061612/diag_amsua_metop-c_03.2026061612 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061612/diag_atms_n20_01.2026061612 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061612/diag_atms_n20_03.2026061612 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061612/diag_atms_n21_01.2026061612 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061612/diag_atms_n21_03.2026061612 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061612/diag_atms_npp_01.2026061612 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061612/diag_atms_npp_03.2026061612 mv: cannot move '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061612/diag' to '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061612/diag': File exists cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061612/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061612/. cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061612/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061612/. 14 minutes and 32 seconds elapsed.  > Fim do GSI  Testando os dados convencionais do CPTEC se ok: 2026061612 >>>>>>> Verificar dados assimilados.... /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/./runPythonCheck.py:3: DeprecationWarning: You are importing the legacy package 'gsidiag'. This interface is deprecated and will be removed in a future major release. Please migrate to 'readDiag.open.open_diagnostic' and the DiagnosticAPI. import gsidiag as gd 2026-06-25 20:46:24,735 readDiag INFO read_conv_file completed in 0.824s ##### Lendo o arquivo do OMF: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061612/diag_conv_01.2026061612 ##### Lista das variaveis disponiveis no OMF (pfileinfo): Variable Name : uv └── kx => 240 242 243 244 245 246 247 250 252 253 254 255 260 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 2026-06-25 20:46:28,250 readDiag INFO read_conv_file completed in 0.822s ##### Lendo o arquivo do OMA: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061612/diag_conv_03.2026061612 ##### Lista das variaveis disponiveis no OMA (pfileinfo): Variable Name : uv └── kx => 240 242 243 244 245 246 247 250 252 253 254 255 260 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 ----------------- Fim do teste do Python --------------------  > Executando o MCGA  /bin/bash /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/scripts/run_model.sh 2026061612 2026061621 CPT 299 64 64 No This will run on EGEON Cluster ...[INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >> Submetendo o MCGA: 2026061612  > Resolucao (espectral) :  TQ0299L064  > Resolucao (grade) :  G00450L064   > Condicao Inicial :  2026061612  > Previsao ate :  2026061621  > Pos-proc. Ativado :  no  Running BAM Pre-process for 2026061612  SmoothTopo = .TRUE.  set PREFIX =  SMT [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061612 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [RUN] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [NOT] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [NOT] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [NOT] SSTWeeklyNCEP [NOT] SSTWeekly [NOT] SNOWWeekly [NOT] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [NOT] TopographyGradient [INFO] Procurando an?lise NCEP para: 2026061612 [INFO] Detected: EGEON Cluster [INFO] Caminhos de busca: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain:/oper/dados/ioper/tempo/NCEP/input/2026/06/16/12 [INFO] Verificando diret?rio: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain [INFO] Arquivo encontrado: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas.T12Z.atmanl.netcdf.2026061612 ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061612_1782431192  Running Pre-processes at egeon  Running PreBAM  [ OK ] 1st call to runPre. Status: 0  Running BAM Pre-process for 2026061612 [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061612 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [NOT] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [RUN] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [RUN] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [RUN] SSTWeeklyNCEP [RUN] SSTWeekly [NOT] SNOWWeekly [RUN] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [RUN] TopographyGradient [INFO] Detected: EGEON Cluster [INFO] Searching SST on egeon [INFO] Target SST date: 2026061612 [INFO] Attempting SST retrieval (try 0) [FAIL: No valid SST file found for 2026061612] [INFO] Trying earlier time step: 2026061606 [INFO] Checking if SST was previously converted... [INFO] Reusing previous SST file: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas1.T06Z.sstgrd.2026061606 [INFO] Detected: EGEON Cluster  Getting Soil Moisture file for: 2026061612 Search 0 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/GL_SM.GPNR.2026061612.vfm ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061612_1782431619  Running Pre-processes at egeon  Running PreBAM  [ OK ] 2nd call to runPre. Status: 0 [INFO] Detected: EGEON Cluster running :: runModel -das -v -np 64 -N 16 -d 8 -t 299 -l 64 -I 2026061612 -F 2026061621 -W 2026061621 -px CPT -py CPT -s sstwkl -ts 3 -r -tr 6 -i -3 -s sstwkl [INFO] Detected: EGEON Cluster  Running BAM  [ OK ] 8 minutes and 2 seconds elapsed.  > Fim do MCGA   >>> Submetendo o Sistema SMNA_v3.0.0.t12717/SMG para o dia 2026061618   > Executando o GSI  [INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >>>> Carregando arquivos prepBufrs do NCEP  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/16 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : amsuabufrNCEP atmsbufrNCEP gpsrobufrNCEP satwndbufrNCEP [ OK ] link amsuabufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/16/gdas.t18z.1bamua.tm00.bufr_d ] [ OK ] link atmsbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/16/gdas.t18z.atms.tm00.bufr_d ] [ OK ] link gpsrobufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/16/gdas.t18z.gpsro.tm00.bufr_d.nr ] [ OK ] link satwndbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/16/gdas.t18z.satwnd.tm00.bufr_d ]  Found 4 observation files from NCEP to use  >>>> Carregando arquivos prepBufrs do INPE  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/16 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : prepbufrINPE [ OK ] link prepbufrINPE @ [ /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/16/inpe.t18z.prepbufr.nr ]  Found 1 observation files from INPE to use Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061612/GFCTCPT20260616122026061615F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061612/GFCTCPT20260616122026061618F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061612/GFCTCPT20260616122026061621F.fct.TQ0299L064 Copy of Public fixed files cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061612/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061618/satbias_in cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061612/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061618/satbias_pc Entrando no ciclo de BcCycles para 0  Running GSI  using /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/gsiparm.anl to setup GSI run  [ OK ] >>> mergeDiagFiles Merging diag files amsua_metop-b, outer loop 01 [ OK ] Merging diag files amsua_metop-b, outer loop 03 [ OK ] Merging diag files amsua_metop-c, outer loop 01 [ OK ] Merging diag files amsua_metop-c, outer loop 03 [ OK ] Merging diag files atms_n20, outer loop 01 [ OK ] Merging diag files atms_n20, outer loop 03 [ OK ] Merging diag files atms_n21, outer loop 01 [ OK ] Merging diag files atms_n21, outer loop 03 [ OK ] Merging diag files atms_npp, outer loop 01 [ OK ] Merging diag files atms_npp, outer loop 03 [ OK ] Merging diag files conv, outer loop 01 [ OK ] Merging diag files conv, outer loop 03 [ OK ] Merging diag files obs, outer loop setup [ OK ] >>> mergeDiagFiles do diagnostico da radiβncia /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061618/diag_amsua_metop-b_01.2026061618 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061618/diag_amsua_metop-b_03.2026061618 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061618/diag_amsua_metop-c_01.2026061618 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061618/diag_amsua_metop-c_03.2026061618 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061618/diag_atms_n20_01.2026061618 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061618/diag_atms_n20_03.2026061618 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061618/diag_atms_n21_01.2026061618 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061618/diag_atms_n21_03.2026061618 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061618/diag_atms_npp_01.2026061618 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061618/diag_atms_npp_03.2026061618 mv: cannot move '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061618/diag' to '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061618/diag': File exists cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061618/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061618/. cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061618/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061618/. 14 minutes and 31 seconds elapsed.  > Fim do GSI  Testando os dados convencionais do CPTEC se ok: 2026061618 >>>>>>> Verificar dados assimilados.... /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/./runPythonCheck.py:3: DeprecationWarning: You are importing the legacy package 'gsidiag'. This interface is deprecated and will be removed in a future major release. Please migrate to 'readDiag.open.open_diagnostic' and the DiagnosticAPI. import gsidiag as gd 2026-06-25 21:09:06,368 readDiag INFO read_conv_file completed in 1.077s ##### Lendo o arquivo do OMF: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061618/diag_conv_01.2026061618 ##### Lista das variaveis disponiveis no OMF (pfileinfo): Variable Name : uv └── kx => 240 242 243 244 245 246 247 250 252 253 254 255 260 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 2026-06-25 21:09:10,184 readDiag INFO read_conv_file completed in 0.718s ##### Lendo o arquivo do OMA: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061618/diag_conv_03.2026061618 ##### Lista das variaveis disponiveis no OMA (pfileinfo): Variable Name : uv └── kx => 240 242 243 244 245 246 247 250 252 253 254 255 260 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 ----------------- Fim do teste do Python --------------------  > Executando o MCGA  /bin/bash /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/scripts/run_model.sh 2026061618 2026061703 CPT 299 64 64 No This will run on EGEON Cluster ...[INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >> Submetendo o MCGA: 2026061618  > Resolucao (espectral) :  TQ0299L064  > Resolucao (grade) :  G00450L064   > Condicao Inicial :  2026061618  > Previsao ate :  2026061703  > Pos-proc. Ativado :  no  Running BAM Pre-process for 2026061618  SmoothTopo = .TRUE.  set PREFIX =  SMT [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061618 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [RUN] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [NOT] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [NOT] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [NOT] SSTWeeklyNCEP [NOT] SSTWeekly [NOT] SNOWWeekly [NOT] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [NOT] TopographyGradient [INFO] Procurando an?lise NCEP para: 2026061618 [INFO] Detected: EGEON Cluster [INFO] Caminhos de busca: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain:/oper/dados/ioper/tempo/NCEP/input/2026/06/16/18 [INFO] Verificando diret?rio: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain [INFO] Arquivo encontrado: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gblav.T18Z.atmanl.netcdf.2026061618  >>>> WARNNING <<<< Using  gblav  anl file GDASType was set as: Netcdf  Is this correct?  >>>>>>>>><<<<<<<<< ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061618_1782432554  Running Pre-processes at egeon  Running PreBAM  [ OK ] 1st call to runPre. Status: 0  Running BAM Pre-process for 2026061618 [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061618 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [NOT] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [RUN] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [RUN] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [RUN] SSTWeeklyNCEP [RUN] SSTWeekly [NOT] SNOWWeekly [RUN] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [RUN] TopographyGradient [INFO] Detected: EGEON Cluster [INFO] Searching SST on egeon [INFO] Target SST date: 2026061618 [INFO] Attempting SST retrieval (try 0) [FAIL: No valid SST file found for 2026061618] [INFO] Trying earlier time step: 2026061612 [INFO] Checking if SST was previously converted... [INFO] Reusing previous SST file: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas1.T12Z.sstgrd.2026061612 [INFO] Detected: EGEON Cluster  Getting Soil Moisture file for: 2026061618 Search 0 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/GL_SM.GPNR.2026061618.vfm ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061618_1782432981  Running Pre-processes at egeon  Running PreBAM  [ OK ] 2nd call to runPre. Status: 0 [INFO] Detected: EGEON Cluster running :: runModel -das -v -np 64 -N 16 -d 8 -t 299 -l 64 -I 2026061618 -F 2026061703 -W 2026061703 -px CPT -py CPT -s sstwkl -ts 3 -r -tr 6 -i -3 -s sstwkl [INFO] Detected: EGEON Cluster  Running BAM  [ OK ] 8 minutes and 1 seconds elapsed.  > Fim do MCGA   >>> Submetendo o Sistema SMNA_v3.0.0.t12717/SMG para o dia 2026061700   > Executando o GSI  [INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >>>> Carregando arquivos prepBufrs do NCEP  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/17 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : amsuabufrNCEP atmsbufrNCEP gpsrobufrNCEP satwndbufrNCEP [ OK ] link amsuabufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/17/gdas.t00z.1bamua.tm00.bufr_d ] [ OK ] link atmsbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/17/gdas.t00z.atms.tm00.bufr_d ] [ OK ] link gpsrobufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/17/gdas.t00z.gpsro.tm00.bufr_d.nr ] [ OK ] link satwndbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/17/gdas.t00z.satwnd.tm00.bufr_d ]  Found 4 observation files from NCEP to use  >>>> Carregando arquivos prepBufrs do INPE  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/17 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : prepbufrINPE [ OK ] link prepbufrINPE @ [ /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/17/inpe.t00z.prepbufr.nr ]  Found 1 observation files from INPE to use Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061618/GFCTCPT20260616182026061621F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061618/GFCTCPT20260616182026061700F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061618/GFCTCPT20260616182026061703F.fct.TQ0299L064 Copy of Public fixed files cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061618/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061700/satbias_in cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061618/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061700/satbias_pc Entrando no ciclo de BcCycles para 0  Running GSI  using /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/gsiparm.anl to setup GSI run  [ OK ] >>> mergeDiagFiles Merging diag files amsua_metop-b, outer loop 01 [ OK ] Merging diag files amsua_metop-b, outer loop 03 [ OK ] Merging diag files amsua_metop-c, outer loop 01 [ OK ] Merging diag files amsua_metop-c, outer loop 03 [ OK ] Merging diag files atms_n20, outer loop 01 [ OK ] Merging diag files atms_n20, outer loop 03 [ OK ] Merging diag files atms_n21, outer loop 01 [ OK ] Merging diag files atms_n21, outer loop 03 [ OK ] Merging diag files atms_npp, outer loop 01 [ OK ] Merging diag files atms_npp, outer loop 03 [ OK ] Merging diag files conv, outer loop 01 [ OK ] Merging diag files conv, outer loop 03 [ OK ] Merging diag files obs, outer loop setup [ OK ] >>> mergeDiagFiles do diagnostico da radiβncia /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061700/diag_amsua_metop-b_01.2026061700 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061700/diag_amsua_metop-b_03.2026061700 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061700/diag_amsua_metop-c_01.2026061700 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061700/diag_amsua_metop-c_03.2026061700 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061700/diag_atms_n20_01.2026061700 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061700/diag_atms_n20_03.2026061700 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061700/diag_atms_n21_01.2026061700 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061700/diag_atms_n21_03.2026061700 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061700/diag_atms_npp_01.2026061700 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061700/diag_atms_npp_03.2026061700 mv: cannot move '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061700/diag' to '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061700/diag': File exists cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061700/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061700/. cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061700/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061700/. 14 minutes and 0 seconds elapsed.  > Fim do GSI  Testando os dados convencionais do CPTEC se ok: 2026061700 >>>>>>> Verificar dados assimilados.... /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/./runPythonCheck.py:3: DeprecationWarning: You are importing the legacy package 'gsidiag'. This interface is deprecated and will be removed in a future major release. Please migrate to 'readDiag.open.open_diagnostic' and the DiagnosticAPI. import gsidiag as gd 2026-06-25 21:31:17,044 readDiag INFO read_conv_file completed in 1.249s ##### Lendo o arquivo do OMF: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061700/diag_conv_01.2026061700 ##### Lista das variaveis disponiveis no OMF (pfileinfo): Variable Name : ps └── kx => 120 180 181 183 187 Variable Name : t └── kx => 130 180 181 183 187 Variable Name : uv └── kx => 220 229 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 Variable Name : q └── kx => 180 183 Variable Name : sst └── kx => 183 2026-06-25 21:31:21,542 readDiag INFO read_conv_file completed in 0.944s ##### Lendo o arquivo do OMA: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061700/diag_conv_03.2026061700 ##### Lista das variaveis disponiveis no OMA (pfileinfo): Variable Name : ps └── kx => 120 180 181 183 187 Variable Name : t └── kx => 130 180 181 183 187 Variable Name : uv └── kx => 220 229 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 Variable Name : q └── kx => 180 183 Variable Name : sst └── kx => 183 ----------------- Fim do teste do Python --------------------  > Executando o MCGA  /bin/bash /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/scripts/run_model.sh 2026061700 2026061709 CPT 299 64 64 No This will run on EGEON Cluster ...[INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >> Submetendo o MCGA: 2026061700  > Resolucao (espectral) :  TQ0299L064  > Resolucao (grade) :  G00450L064   > Condicao Inicial :  2026061700  > Previsao ate :  2026061709  > Pos-proc. Ativado :  no  Running BAM Pre-process for 2026061700  SmoothTopo = .TRUE.  set PREFIX =  SMT [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061700 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [RUN] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [NOT] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [NOT] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [NOT] SSTWeeklyNCEP [NOT] SSTWeekly [NOT] SNOWWeekly [NOT] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [NOT] TopographyGradient [INFO] Procurando an?lise NCEP para: 2026061700 [INFO] Detected: EGEON Cluster [INFO] Caminhos de busca: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain:/oper/dados/ioper/tempo/NCEP/input/2026/06/17/00 [INFO] Verificando diret?rio: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain [INFO] Arquivo encontrado: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gblav.T00Z.atmanl.netcdf.2026061700  >>>> WARNNING <<<< Using  gblav  anl file GDASType was set as: Netcdf  Is this correct?  >>>>>>>>><<<<<<<<< ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061700_1782433886  Running Pre-processes at egeon  Running PreBAM  [ OK ] 1st call to runPre. Status: 0  Running BAM Pre-process for 2026061700 [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061700 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [NOT] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [RUN] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [RUN] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [RUN] SSTWeeklyNCEP [RUN] SSTWeekly [NOT] SNOWWeekly [RUN] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [RUN] TopographyGradient [INFO] Detected: EGEON Cluster [INFO] Searching SST on egeon [INFO] Target SST date: 2026061700 [INFO] Attempting SST retrieval (try 0) [INFO] Found file: /oper/dados/ioper/tempo/NCEP/input/2026/06/17/00/rtgssthr_grb_0.083.grib2.20260617 [INFO] Detected GRIB2 format (1 records) [GRIB2 CONVERSION:] SUCCESS [INFO] Detected: EGEON Cluster  Getting Soil Moisture file for: 2026061700 Search 0 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/GL_SM.GPNR.2026061700.vfm ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061700_1782434313  Running Pre-processes at egeon  Running PreBAM  [ OK ] 2nd call to runPre. Status: 0 [INFO] Detected: EGEON Cluster running :: runModel -das -v -np 64 -N 16 -d 8 -t 299 -l 64 -I 2026061700 -F 2026061709 -W 2026061709 -px CPT -py CPT -s sstwkl -ts 3 -r -tr 6 -i -3 -s sstwkl [INFO] Detected: EGEON Cluster  Running BAM  [ OK ] 8 minutes and 4 seconds elapsed.  > Fim do MCGA   >>> Submetendo o Sistema SMNA_v3.0.0.t12717/SMG para o dia 2026061706   > Executando o GSI  [INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >>>> Carregando arquivos prepBufrs do NCEP  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/17 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : amsuabufrNCEP atmsbufrNCEP gpsrobufrNCEP satwndbufrNCEP [ OK ] link amsuabufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/17/gdas.t06z.1bamua.tm00.bufr_d ] [ OK ] link atmsbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/17/gdas.t06z.atms.tm00.bufr_d ] [ OK ] link gpsrobufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/17/gdas.t06z.gpsro.tm00.bufr_d.nr ] [ OK ] link satwndbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/17/gdas.t06z.satwnd.tm00.bufr_d ]  Found 4 observation files from NCEP to use  >>>> Carregando arquivos prepBufrs do INPE  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/17 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : prepbufrINPE [ OK ] link prepbufrINPE @ [ /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/17/inpe.t06z.prepbufr.nr ]  Found 1 observation files from INPE to use Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061700/GFCTCPT20260617002026061703F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061700/GFCTCPT20260617002026061706F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061700/GFCTCPT20260617002026061709F.fct.TQ0299L064 Copy of Public fixed files cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061700/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061706/satbias_in cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061700/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061706/satbias_pc Entrando no ciclo de BcCycles para 0  Running GSI  using /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/gsiparm.anl to setup GSI run  [ OK ] >>> mergeDiagFiles Merging diag files amsua_metop-b, outer loop 01 [ OK ] Merging diag files amsua_metop-b, outer loop 03 [ OK ] Merging diag files amsua_metop-c, outer loop 01 [ OK ] Merging diag files amsua_metop-c, outer loop 03 [ OK ] Merging diag files atms_n20, outer loop 01 [ OK ] Merging diag files atms_n20, outer loop 03 [ OK ] Merging diag files atms_n21, outer loop 01 [ OK ] Merging diag files atms_n21, outer loop 03 [ OK ] Merging diag files atms_npp, outer loop 01 [ OK ] Merging diag files atms_npp, outer loop 03 [ OK ] Merging diag files conv, outer loop 01 [ OK ] Merging diag files conv, outer loop 03 [ OK ] Merging diag files obs, outer loop setup [ OK ] >>> mergeDiagFiles do diagnostico da radiβncia /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061706/diag_amsua_metop-b_01.2026061706 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061706/diag_amsua_metop-b_03.2026061706 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061706/diag_amsua_metop-c_01.2026061706 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061706/diag_amsua_metop-c_03.2026061706 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061706/diag_atms_n20_01.2026061706 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061706/diag_atms_n20_03.2026061706 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061706/diag_atms_n21_01.2026061706 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061706/diag_atms_n21_03.2026061706 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061706/diag_atms_npp_01.2026061706 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061706/diag_atms_npp_03.2026061706 mv: cannot move '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061706/diag' to '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061706/diag': File exists cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061706/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061706/. cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061706/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061706/. 12 minutes and 52 seconds elapsed.  > Fim do GSI  Testando os dados convencionais do CPTEC se ok: 2026061706 >>>>>>> Verificar dados assimilados.... /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/./runPythonCheck.py:3: DeprecationWarning: You are importing the legacy package 'gsidiag'. This interface is deprecated and will be removed in a future major release. Please migrate to 'readDiag.open.open_diagnostic' and the DiagnosticAPI. import gsidiag as gd 2026-06-25 21:52:23,022 readDiag INFO read_conv_file completed in 0.867s ##### Lendo o arquivo do OMF: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061706/diag_conv_01.2026061706 ##### Lista das variaveis disponiveis no OMF (pfileinfo): Variable Name : ps └── kx => 120 180 181 187 Variable Name : t └── kx => 130 180 181 183 187 Variable Name : uv └── kx => 220 229 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 Variable Name : q └── kx => 180 183 Variable Name : sst └── kx => 183 2026-06-25 21:52:26,596 readDiag INFO read_conv_file completed in 0.769s ##### Lendo o arquivo do OMA: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061706/diag_conv_03.2026061706 ##### Lista das variaveis disponiveis no OMA (pfileinfo): Variable Name : ps └── kx => 120 180 181 187 Variable Name : t └── kx => 130 180 181 183 187 Variable Name : uv └── kx => 220 229 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 Variable Name : q └── kx => 180 183 Variable Name : sst └── kx => 183 ----------------- Fim do teste do Python --------------------  > Executando o MCGA  /bin/bash /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/scripts/run_model.sh 2026061706 2026061715 CPT 299 64 64 No This will run on EGEON Cluster ...[INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >> Submetendo o MCGA: 2026061706  > Resolucao (espectral) :  TQ0299L064  > Resolucao (grade) :  G00450L064   > Condicao Inicial :  2026061706  > Previsao ate :  2026061715  > Pos-proc. Ativado :  no  Running BAM Pre-process for 2026061706  SmoothTopo = .TRUE.  set PREFIX =  SMT [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061706 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [RUN] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [NOT] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [NOT] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [NOT] SSTWeeklyNCEP [NOT] SSTWeekly [NOT] SNOWWeekly [NOT] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [NOT] TopographyGradient [INFO] Procurando an?lise NCEP para: 2026061706 [INFO] Detected: EGEON Cluster [INFO] Caminhos de busca: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain:/oper/dados/ioper/tempo/NCEP/input/2026/06/17/06 [INFO] Verificando diret?rio: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain [INFO] Arquivo encontrado: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gblav.T06Z.atmanl.netcdf.2026061706  >>>> WARNNING <<<< Using  gblav  anl file GDASType was set as: Netcdf  Is this correct?  >>>>>>>>><<<<<<<<< ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061706_1782435150  Running Pre-processes at egeon  Running PreBAM  [ OK ] 1st call to runPre. Status: 0  Running BAM Pre-process for 2026061706 [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061706 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [NOT] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [RUN] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [RUN] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [RUN] SSTWeeklyNCEP [RUN] SSTWeekly [NOT] SNOWWeekly [RUN] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [RUN] TopographyGradient [INFO] Detected: EGEON Cluster [INFO] Searching SST on egeon [INFO] Target SST date: 2026061706 [INFO] Attempting SST retrieval (try 0) [FAIL: No valid SST file found for 2026061706] [INFO] Trying earlier time step: 2026061700 [INFO] Checking if SST was previously converted... [INFO] Reusing previous SST file: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas1.T00Z.sstgrd.2026061700 [INFO] Detected: EGEON Cluster  Getting Soil Moisture file for: 2026061706 Search 0 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/GL_SM.GPNR.2026061706.vfm ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061706_1782435577  Running Pre-processes at egeon  Running PreBAM  [ OK ] 2nd call to runPre. Status: 0 [INFO] Detected: EGEON Cluster running :: runModel -das -v -np 64 -N 16 -d 8 -t 299 -l 64 -I 2026061706 -F 2026061715 -W 2026061715 -px CPT -py CPT -s sstwkl -ts 3 -r -tr 6 -i -3 -s sstwkl [INFO] Detected: EGEON Cluster  Running BAM  [ OK ] 8 minutes and 1 seconds elapsed.  > Fim do MCGA   >>> Submetendo o Sistema SMNA_v3.0.0.t12717/SMG para o dia 2026061712   > Executando o GSI  [INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >>>> Carregando arquivos prepBufrs do NCEP  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/17 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : amsuabufrNCEP atmsbufrNCEP gpsrobufrNCEP satwndbufrNCEP [ OK ] link amsuabufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/17/gdas.t12z.1bamua.tm00.bufr_d ] [ OK ] link atmsbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/17/gdas.t12z.atms.tm00.bufr_d ] [ OK ] link gpsrobufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/17/gdas.t12z.gpsro.tm00.bufr_d.nr ] [ OK ] link satwndbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/17/gdas.t12z.satwnd.tm00.bufr_d ]  Found 4 observation files from NCEP to use  >>>> Carregando arquivos prepBufrs do INPE  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/17 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : prepbufrINPE [ OK ] link prepbufrINPE @ [ /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/17/inpe.t12z.prepbufr.nr ]  Found 1 observation files from INPE to use Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061706/GFCTCPT20260617062026061709F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061706/GFCTCPT20260617062026061712F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061706/GFCTCPT20260617062026061715F.fct.TQ0299L064 Copy of Public fixed files cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061706/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061712/satbias_in cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061706/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061712/satbias_pc Entrando no ciclo de BcCycles para 0  Running GSI  using /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/gsiparm.anl to setup GSI run  [ OK ] >>> mergeDiagFiles Merging diag files amsua_metop-b, outer loop 01 [ OK ] Merging diag files amsua_metop-b, outer loop 03 [ OK ] Merging diag files amsua_metop-c, outer loop 01 [ OK ] Merging diag files amsua_metop-c, outer loop 03 [ OK ] Merging diag files atms_n20, outer loop 01 [ OK ] Merging diag files atms_n20, outer loop 03 [ OK ] Merging diag files atms_n21, outer loop 01 [ OK ] Merging diag files atms_n21, outer loop 03 [ OK ] Merging diag files atms_npp, outer loop 01 [ OK ] Merging diag files atms_npp, outer loop 03 [ OK ] Merging diag files conv, outer loop 01 [ OK ] Merging diag files conv, outer loop 03 [ OK ] Merging diag files obs, outer loop setup [ OK ] >>> mergeDiagFiles do diagnostico da radiβncia /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061712/diag_amsua_metop-b_01.2026061712 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061712/diag_amsua_metop-b_03.2026061712 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061712/diag_amsua_metop-c_01.2026061712 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061712/diag_amsua_metop-c_03.2026061712 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061712/diag_atms_n20_01.2026061712 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061712/diag_atms_n20_03.2026061712 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061712/diag_atms_n21_01.2026061712 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061712/diag_atms_n21_03.2026061712 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061712/diag_atms_npp_01.2026061712 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061712/diag_atms_npp_03.2026061712 mv: cannot move '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061712/diag' to '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061712/diag': File exists cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061712/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061712/. cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061712/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061712/. 14 minutes and 2 seconds elapsed.  > Fim do GSI  Testando os dados convencionais do CPTEC se ok: 2026061712 >>>>>>> Verificar dados assimilados.... /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/./runPythonCheck.py:3: DeprecationWarning: You are importing the legacy package 'gsidiag'. This interface is deprecated and will be removed in a future major release. Please migrate to 'readDiag.open.open_diagnostic' and the DiagnosticAPI. import gsidiag as gd 2026-06-25 22:14:36,754 readDiag INFO read_conv_file completed in 0.946s ##### Lendo o arquivo do OMF: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061712/diag_conv_01.2026061712 ##### Lista das variaveis disponiveis no OMF (pfileinfo): Variable Name : ps └── kx => 120 181 187 Variable Name : t └── kx => 130 181 183 187 Variable Name : uv └── kx => 220 229 230 240 242 243 244 245 246 247 250 252 253 254 255 260 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 2026-06-25 22:14:40,704 readDiag INFO read_conv_file completed in 0.850s ##### Lendo o arquivo do OMA: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061712/diag_conv_03.2026061712 ##### Lista das variaveis disponiveis no OMA (pfileinfo): Variable Name : ps └── kx => 120 181 187 Variable Name : t └── kx => 130 181 183 187 Variable Name : uv └── kx => 220 229 230 240 242 243 244 245 246 247 250 252 253 254 255 260 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 ----------------- Fim do teste do Python --------------------  > Executando o MCGA  /bin/bash /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/scripts/run_model.sh 2026061712 2026061721 CPT 299 64 64 No This will run on EGEON Cluster ...[INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >> Submetendo o MCGA: 2026061712  > Resolucao (espectral) :  TQ0299L064  > Resolucao (grade) :  G00450L064   > Condicao Inicial :  2026061712  > Previsao ate :  2026061721  > Pos-proc. Ativado :  no  Running BAM Pre-process for 2026061712  SmoothTopo = .TRUE.  set PREFIX =  SMT [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061712 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [RUN] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [NOT] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [NOT] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [NOT] SSTWeeklyNCEP [NOT] SSTWeekly [NOT] SNOWWeekly [NOT] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [NOT] TopographyGradient [INFO] Procurando an?lise NCEP para: 2026061712 [INFO] Detected: EGEON Cluster [INFO] Caminhos de busca: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain:/oper/dados/ioper/tempo/NCEP/input/2026/06/17/12 [INFO] Verificando diret?rio: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain [INFO] Arquivo encontrado: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gblav.T12Z.atmanl.netcdf.2026061712  >>>> WARNNING <<<< Using  gblav  anl file GDASType was set as: Netcdf  Is this correct?  >>>>>>>>><<<<<<<<< ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061712_1782436485  Running Pre-processes at egeon  Running PreBAM  [ OK ] 1st call to runPre. Status: 0  Running BAM Pre-process for 2026061712 [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061712 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [NOT] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [RUN] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [RUN] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [RUN] SSTWeeklyNCEP [RUN] SSTWeekly [NOT] SNOWWeekly [RUN] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [RUN] TopographyGradient [INFO] Detected: EGEON Cluster [INFO] Searching SST on egeon [INFO] Target SST date: 2026061712 [INFO] Attempting SST retrieval (try 0) [FAIL: No valid SST file found for 2026061712] [INFO] Trying earlier time step: 2026061706 [INFO] Checking if SST was previously converted... [INFO] Reusing previous SST file: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas1.T06Z.sstgrd.2026061706 [INFO] Detected: EGEON Cluster  Getting Soil Moisture file for: 2026061712 Search 0 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/GL_SM.GPNR.2026061712.vfm ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061712_1782436911  Running Pre-processes at egeon  Running PreBAM  [ OK ] 2nd call to runPre. Status: 0 [INFO] Detected: EGEON Cluster running :: runModel -das -v -np 64 -N 16 -d 8 -t 299 -l 64 -I 2026061712 -F 2026061721 -W 2026061721 -px CPT -py CPT -s sstwkl -ts 3 -r -tr 6 -i -3 -s sstwkl [INFO] Detected: EGEON Cluster  Running BAM  [ OK ] 8 minutes and 0 seconds elapsed.  > Fim do MCGA   >>> Submetendo o Sistema SMNA_v3.0.0.t12717/SMG para o dia 2026061718   > Executando o GSI  [INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >>>> Carregando arquivos prepBufrs do NCEP  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/17 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : amsuabufrNCEP atmsbufrNCEP gpsrobufrNCEP satwndbufrNCEP [ OK ] link amsuabufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/17/gdas.t18z.1bamua.tm00.bufr_d ] [ OK ] link atmsbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/17/gdas.t18z.atms.tm00.bufr_d ] [ OK ] link gpsrobufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/17/gdas.t18z.gpsro.tm00.bufr_d.nr ] [ OK ] link satwndbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/17/gdas.t18z.satwnd.tm00.bufr_d ]  Found 4 observation files from NCEP to use  >>>> Carregando arquivos prepBufrs do INPE  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/17 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : prepbufrINPE [ OK ] link prepbufrINPE @ [ /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/17/inpe.t18z.prepbufr.nr ]  Found 1 observation files from INPE to use Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061712/GFCTCPT20260617122026061715F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061712/GFCTCPT20260617122026061718F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061712/GFCTCPT20260617122026061721F.fct.TQ0299L064 Copy of Public fixed files cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061712/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061718/satbias_in cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061712/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061718/satbias_pc Entrando no ciclo de BcCycles para 0  Running GSI  using /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/gsiparm.anl to setup GSI run  [ OK ] >>> mergeDiagFiles Merging diag files amsua_metop-b, outer loop 01 [ OK ] Merging diag files amsua_metop-b, outer loop 03 [ OK ] Merging diag files amsua_metop-c, outer loop 01 [ OK ] Merging diag files amsua_metop-c, outer loop 03 [ OK ] Merging diag files atms_n20, outer loop 01 [ OK ] Merging diag files atms_n20, outer loop 03 [ OK ] Merging diag files atms_n21, outer loop 01 [ OK ] Merging diag files atms_n21, outer loop 03 [ OK ] Merging diag files atms_npp, outer loop 01 [ OK ] Merging diag files atms_npp, outer loop 03 [ OK ] Merging diag files conv, outer loop 01 [ OK ] Merging diag files conv, outer loop 03 [ OK ] Merging diag files obs, outer loop setup [ OK ] >>> mergeDiagFiles do diagnostico da radiβncia /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061718/diag_amsua_metop-b_01.2026061718 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061718/diag_amsua_metop-b_03.2026061718 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061718/diag_amsua_metop-c_01.2026061718 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061718/diag_amsua_metop-c_03.2026061718 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061718/diag_atms_n20_01.2026061718 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061718/diag_atms_n20_03.2026061718 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061718/diag_atms_n21_01.2026061718 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061718/diag_atms_n21_03.2026061718 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061718/diag_atms_npp_01.2026061718 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061718/diag_atms_npp_03.2026061718 mv: cannot move '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061718/diag' to '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061718/diag': File exists cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061718/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061718/. cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061718/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061718/. 14 minutes and 29 seconds elapsed.  > Fim do GSI  Testando os dados convencionais do CPTEC se ok: 2026061718 >>>>>>> Verificar dados assimilados.... /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/./runPythonCheck.py:3: DeprecationWarning: You are importing the legacy package 'gsidiag'. This interface is deprecated and will be removed in a future major release. Please migrate to 'readDiag.open.open_diagnostic' and the DiagnosticAPI. import gsidiag as gd 2026-06-25 22:37:16,111 readDiag INFO read_conv_file completed in 1.227s ##### Lendo o arquivo do OMF: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061718/diag_conv_01.2026061718 ##### Lista das variaveis disponiveis no OMF (pfileinfo): Variable Name : ps └── kx => 120 181 183 187 Variable Name : t └── kx => 130 181 183 187 Variable Name : uv └── kx => 220 229 230 240 242 243 244 245 246 247 250 252 253 254 255 260 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 2026-06-25 22:37:20,567 readDiag INFO read_conv_file completed in 0.857s ##### Lendo o arquivo do OMA: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061718/diag_conv_03.2026061718 ##### Lista das variaveis disponiveis no OMA (pfileinfo): Variable Name : ps └── kx => 120 181 183 187 Variable Name : t └── kx => 130 181 183 187 Variable Name : uv └── kx => 220 229 230 240 242 243 244 245 246 247 250 252 253 254 255 260 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 ----------------- Fim do teste do Python --------------------  > Executando o MCGA  /bin/bash /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/scripts/run_model.sh 2026061718 2026061803 CPT 299 64 64 No This will run on EGEON Cluster ...[INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >> Submetendo o MCGA: 2026061718  > Resolucao (espectral) :  TQ0299L064  > Resolucao (grade) :  G00450L064   > Condicao Inicial :  2026061718  > Previsao ate :  2026061803  > Pos-proc. Ativado :  no  Running BAM Pre-process for 2026061718  SmoothTopo = .TRUE.  set PREFIX =  SMT [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061718 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [RUN] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [NOT] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [NOT] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [NOT] SSTWeeklyNCEP [NOT] SSTWeekly [NOT] SNOWWeekly [NOT] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [NOT] TopographyGradient [INFO] Procurando an?lise NCEP para: 2026061718 [INFO] Detected: EGEON Cluster [INFO] Caminhos de busca: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain:/oper/dados/ioper/tempo/NCEP/input/2026/06/17/18 [INFO] Verificando diret?rio: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain [INFO] Arquivo encontrado: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gblav.T18Z.atmanl.netcdf.2026061718  >>>> WARNNING <<<< Using  gblav  anl file GDASType was set as: Netcdf  Is this correct?  >>>>>>>>><<<<<<<<< ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061718_1782437844  Running Pre-processes at egeon  Running PreBAM  [ OK ] 1st call to runPre. Status: 0  Running BAM Pre-process for 2026061718 [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061718 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [NOT] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [RUN] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [RUN] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [RUN] SSTWeeklyNCEP [RUN] SSTWeekly [NOT] SNOWWeekly [RUN] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [RUN] TopographyGradient [INFO] Detected: EGEON Cluster [INFO] Searching SST on egeon [INFO] Target SST date: 2026061718 [INFO] Attempting SST retrieval (try 0) [FAIL: No valid SST file found for 2026061718] [INFO] Trying earlier time step: 2026061712 [INFO] Checking if SST was previously converted... [INFO] Reusing previous SST file: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas1.T12Z.sstgrd.2026061712 [INFO] Detected: EGEON Cluster  Getting Soil Moisture file for: 2026061718 Search 0 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/GL_SM.GPNR.2026061718.vfm ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061718_1782438272  Running Pre-processes at egeon  Running PreBAM  [ OK ] 2nd call to runPre. Status: 0 [INFO] Detected: EGEON Cluster running :: runModel -das -v -np 64 -N 16 -d 8 -t 299 -l 64 -I 2026061718 -F 2026061803 -W 2026061803 -px CPT -py CPT -s sstwkl -ts 3 -r -tr 6 -i -3 -s sstwkl [INFO] Detected: EGEON Cluster  Running BAM  [ OK ] 8 minutes and 2 seconds elapsed.  > Fim do MCGA   >>> Submetendo o Sistema SMNA_v3.0.0.t12717/SMG para o dia 2026061800   > Executando o GSI  [INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >>>> Carregando arquivos prepBufrs do NCEP  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/18 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : amsuabufrNCEP atmsbufrNCEP gpsrobufrNCEP satwndbufrNCEP [ OK ] link amsuabufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/18/gdas.t00z.1bamua.tm00.bufr_d ] [ OK ] link atmsbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/18/gdas.t00z.atms.tm00.bufr_d ] [ OK ] link gpsrobufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/18/gdas.t00z.gpsro.tm00.bufr_d.nr ] [ OK ] link satwndbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/18/gdas.t00z.satwnd.tm00.bufr_d ]  Found 4 observation files from NCEP to use  >>>> Carregando arquivos prepBufrs do INPE  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/18 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : prepbufrINPE [ OK ] link prepbufrINPE @ [ /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/18/inpe.t00z.prepbufr.nr ]  Found 1 observation files from INPE to use Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061718/GFCTCPT20260617182026061721F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061718/GFCTCPT20260617182026061800F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061718/GFCTCPT20260617182026061803F.fct.TQ0299L064 Copy of Public fixed files cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061718/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061800/satbias_in cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061718/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061800/satbias_pc Entrando no ciclo de BcCycles para 0  Running GSI  using /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/gsiparm.anl to setup GSI run  [ OK ] >>> mergeDiagFiles Merging diag files amsua_metop-b, outer loop 01 [ OK ] Merging diag files amsua_metop-b, outer loop 03 [ OK ] Merging diag files amsua_metop-c, outer loop 01 [ OK ] Merging diag files amsua_metop-c, outer loop 03 [ OK ] Merging diag files atms_n20, outer loop 01 [ OK ] Merging diag files atms_n20, outer loop 03 [ OK ] Merging diag files atms_n21, outer loop 01 [ OK ] Merging diag files atms_n21, outer loop 03 [ OK ] Merging diag files atms_npp, outer loop 01 [ OK ] Merging diag files atms_npp, outer loop 03 [ OK ] Merging diag files conv, outer loop 01 [ OK ] Merging diag files conv, outer loop 03 [ OK ] Merging diag files obs, outer loop setup [ OK ] >>> mergeDiagFiles do diagnostico da radiβncia /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061800/diag_amsua_metop-b_01.2026061800 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061800/diag_amsua_metop-b_03.2026061800 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061800/diag_amsua_metop-c_01.2026061800 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061800/diag_amsua_metop-c_03.2026061800 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061800/diag_atms_n20_01.2026061800 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061800/diag_atms_n20_03.2026061800 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061800/diag_atms_n21_01.2026061800 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061800/diag_atms_n21_03.2026061800 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061800/diag_atms_npp_01.2026061800 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061800/diag_atms_npp_03.2026061800 mv: cannot move '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061800/diag' to '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061800/diag': File exists cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061800/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061800/. cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061800/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061800/. 14 minutes and 4 seconds elapsed.  > Fim do GSI  Testando os dados convencionais do CPTEC se ok: 2026061800 >>>>>>> Verificar dados assimilados.... /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/./runPythonCheck.py:3: DeprecationWarning: You are importing the legacy package 'gsidiag'. This interface is deprecated and will be removed in a future major release. Please migrate to 'readDiag.open.open_diagnostic' and the DiagnosticAPI. import gsidiag as gd 2026-06-25 22:59:32,525 readDiag INFO read_conv_file completed in 1.359s ##### Lendo o arquivo do OMF: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061800/diag_conv_01.2026061800 ##### Lista das variaveis disponiveis no OMF (pfileinfo): Variable Name : ps └── kx => 120 180 181 183 187 Variable Name : t └── kx => 130 180 181 183 187 Variable Name : uv └── kx => 220 229 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 Variable Name : q └── kx => 180 183 Variable Name : sst └── kx => 183 2026-06-25 22:59:37,784 readDiag INFO read_conv_file completed in 1.147s ##### Lendo o arquivo do OMA: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061800/diag_conv_03.2026061800 ##### Lista das variaveis disponiveis no OMA (pfileinfo): Variable Name : ps └── kx => 120 180 181 183 187 Variable Name : t └── kx => 130 180 181 183 187 Variable Name : uv └── kx => 220 229 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 Variable Name : q └── kx => 180 183 Variable Name : sst └── kx => 183 ----------------- Fim do teste do Python --------------------  > Executando o MCGA  /bin/bash /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/scripts/run_model.sh 2026061800 2026061809 CPT 299 64 64 No This will run on EGEON Cluster ...[INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >> Submetendo o MCGA: 2026061800  > Resolucao (espectral) :  TQ0299L064  > Resolucao (grade) :  G00450L064   > Condicao Inicial :  2026061800  > Previsao ate :  2026061809  > Pos-proc. Ativado :  no  Running BAM Pre-process for 2026061800  SmoothTopo = .TRUE.  set PREFIX =  SMT [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061800 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [RUN] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [NOT] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [NOT] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [NOT] SSTWeeklyNCEP [NOT] SSTWeekly [NOT] SNOWWeekly [NOT] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [NOT] TopographyGradient [INFO] Procurando an?lise NCEP para: 2026061800 [INFO] Detected: EGEON Cluster [INFO] Caminhos de busca: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain:/oper/dados/ioper/tempo/NCEP/input/2026/06/18/00 [INFO] Verificando diret?rio: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain [INFO] Arquivo encontrado: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas.T00Z.atmanl.netcdf.2026061800 ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061800_1782439183  Running Pre-processes at egeon  Running PreBAM  [ OK ] 1st call to runPre. Status: 0  Running BAM Pre-process for 2026061800 [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061800 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [NOT] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [RUN] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [RUN] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [RUN] SSTWeeklyNCEP [RUN] SSTWeekly [NOT] SNOWWeekly [RUN] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [RUN] TopographyGradient [INFO] Detected: EGEON Cluster [INFO] Searching SST on egeon [INFO] Target SST date: 2026061800 [INFO] Attempting SST retrieval (try 0) [INFO] Found file: /oper/dados/ioper/tempo/NCEP/input/2026/06/18/00/rtgssthr_grb_0.083.grib2.20260618 [INFO] Detected GRIB2 format (1 records) [GRIB2 CONVERSION:] SUCCESS [INFO] Detected: EGEON Cluster  Getting Soil Moisture file for: 2026061800 Search 0 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/GL_SM.GPNR.2026061800.vfm ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061800_1782439610  Running Pre-processes at egeon  Running PreBAM  [ OK ] 2nd call to runPre. Status: 0 [INFO] Detected: EGEON Cluster running :: runModel -das -v -np 64 -N 16 -d 8 -t 299 -l 64 -I 2026061800 -F 2026061809 -W 2026061809 -px CPT -py CPT -s sstwkl -ts 3 -r -tr 6 -i -3 -s sstwkl [INFO] Detected: EGEON Cluster  Running BAM [ Fail ] 8 minutes and 4 seconds elapsed.  > Fim do MCGA   >>> Submetendo o Sistema SMNA_v3.0.0.t12717/SMG para o dia 2026061806   > Executando o GSI  [INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >>>> Carregando arquivos prepBufrs do NCEP  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/18 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : amsuabufrNCEP atmsbufrNCEP gpsrobufrNCEP satwndbufrNCEP [ OK ] link amsuabufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/18/gdas.t06z.1bamua.tm00.bufr_d ] [ OK ] link atmsbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/18/gdas.t06z.atms.tm00.bufr_d ] [ OK ] link gpsrobufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/18/gdas.t06z.gpsro.tm00.bufr_d.nr ] [ OK ] link satwndbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/18/gdas.t06z.satwnd.tm00.bufr_d ]  Found 4 observation files from NCEP to use  >>>> Carregando arquivos prepBufrs do INPE  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/18 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : prepbufrINPE [ OK ] link prepbufrINPE @ [ /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/18/inpe.t06z.prepbufr.nr ]  Found 1 observation files from INPE to use Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061800/GFCTCPT20260618002026061803F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061800/GFCTCPT20260618002026061806F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061800/GFCTCPT20260618002026061809F.fct.TQ0299L064 Copy of Public fixed files cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061800/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061806/satbias_in cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061800/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061806/satbias_pc Entrando no ciclo de BcCycles para 0  Running GSI  using /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/gsiparm.anl to setup GSI run  [ OK ] >>> mergeDiagFiles Merging diag files amsua_metop-b, outer loop 01 [ OK ] Merging diag files amsua_metop-b, outer loop 03 [ OK ] Merging diag files amsua_metop-c, outer loop 01 [ OK ] Merging diag files amsua_metop-c, outer loop 03 [ OK ] Merging diag files atms_n20, outer loop 01 [ OK ] Merging diag files atms_n20, outer loop 03 [ OK ] Merging diag files atms_n21, outer loop 01 [ OK ] Merging diag files atms_n21, outer loop 03 [ OK ] Merging diag files atms_npp, outer loop 01 [ OK ] Merging diag files atms_npp, outer loop 03 [ OK ] Merging diag files conv, outer loop 01 [ OK ] Merging diag files conv, outer loop 03 [ OK ] Merging diag files obs, outer loop setup [ OK ] >>> mergeDiagFiles do diagnostico da radiβncia /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061806/diag_amsua_metop-b_01.2026061806 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061806/diag_amsua_metop-b_03.2026061806 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061806/diag_amsua_metop-c_01.2026061806 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061806/diag_amsua_metop-c_03.2026061806 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061806/diag_atms_n20_01.2026061806 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061806/diag_atms_n20_03.2026061806 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061806/diag_atms_n21_01.2026061806 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061806/diag_atms_n21_03.2026061806 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061806/diag_atms_npp_01.2026061806 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061806/diag_atms_npp_03.2026061806 mv: cannot move '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061806/diag' to '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061806/diag': File exists cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061806/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061806/. cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061806/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061806/. 14 minutes and 4 seconds elapsed.  > Fim do GSI  Testando os dados convencionais do CPTEC se ok: 2026061806 >>>>>>> Verificar dados assimilados.... /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/./runPythonCheck.py:3: DeprecationWarning: You are importing the legacy package 'gsidiag'. This interface is deprecated and will be removed in a future major release. Please migrate to 'readDiag.open.open_diagnostic' and the DiagnosticAPI. import gsidiag as gd 2026-06-25 23:21:52,534 readDiag INFO read_conv_file completed in 1.119s ##### Lendo o arquivo do OMF: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061806/diag_conv_01.2026061806 ##### Lista das variaveis disponiveis no OMF (pfileinfo): Variable Name : ps └── kx => 120 180 181 183 187 Variable Name : t └── kx => 130 180 181 183 187 Variable Name : uv └── kx => 220 229 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 Variable Name : q └── kx => 180 183 Variable Name : sst └── kx => 183 2026-06-25 23:21:57,550 readDiag INFO read_conv_file completed in 0.953s ##### Lendo o arquivo do OMA: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061806/diag_conv_03.2026061806 ##### Lista das variaveis disponiveis no OMA (pfileinfo): Variable Name : ps └── kx => 120 180 181 183 187 Variable Name : t └── kx => 130 180 181 183 187 Variable Name : uv └── kx => 220 229 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 Variable Name : q └── kx => 180 183 Variable Name : sst └── kx => 183 ----------------- Fim do teste do Python --------------------  > Executando o MCGA  /bin/bash /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/scripts/run_model.sh 2026061806 2026061815 CPT 299 64 64 No This will run on EGEON Cluster ...[INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >> Submetendo o MCGA: 2026061806  > Resolucao (espectral) :  TQ0299L064  > Resolucao (grade) :  G00450L064   > Condicao Inicial :  2026061806  > Previsao ate :  2026061815  > Pos-proc. Ativado :  no  Running BAM Pre-process for 2026061806  SmoothTopo = .TRUE.  set PREFIX =  SMT [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061806 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [RUN] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [NOT] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [NOT] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [NOT] SSTWeeklyNCEP [NOT] SSTWeekly [NOT] SNOWWeekly [NOT] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [NOT] TopographyGradient [INFO] Procurando an?lise NCEP para: 2026061806 [INFO] Detected: EGEON Cluster [INFO] Caminhos de busca: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain:/oper/dados/ioper/tempo/NCEP/input/2026/06/18/06 [INFO] Verificando diret?rio: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain [INFO] Arquivo encontrado: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gblav.T06Z.atmanl.netcdf.2026061806  >>>> WARNNING <<<< Using  gblav  anl file GDASType was set as: Netcdf  Is this correct?  >>>>>>>>><<<<<<<<< ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061806_1782440522  Running Pre-processes at egeon  Running PreBAM  [ OK ] 1st call to runPre. Status: 0  Running BAM Pre-process for 2026061806 [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061806 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [NOT] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [RUN] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [RUN] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [RUN] SSTWeeklyNCEP [RUN] SSTWeekly [NOT] SNOWWeekly [RUN] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [RUN] TopographyGradient [INFO] Detected: EGEON Cluster [INFO] Searching SST on egeon [INFO] Target SST date: 2026061806 [INFO] Attempting SST retrieval (try 0) [FAIL: No valid SST file found for 2026061806] [INFO] Trying earlier time step: 2026061800 [INFO] Checking if SST was previously converted... [INFO] Reusing previous SST file: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas1.T00Z.sstgrd.2026061800 [INFO] Detected: EGEON Cluster  Getting Soil Moisture file for: 2026061806 Search 0 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/GL_SM.GPNR.2026061806.vfm ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061806_1782440949  Running Pre-processes at egeon  Running PreBAM  [ OK ] 2nd call to runPre. Status: 0 [INFO] Detected: EGEON Cluster running :: runModel -das -v -np 64 -N 16 -d 8 -t 299 -l 64 -I 2026061806 -F 2026061815 -W 2026061815 -px CPT -py CPT -s sstwkl -ts 3 -r -tr 6 -i -3 -s sstwkl [INFO] Detected: EGEON Cluster  Running BAM  [ OK ] 8 minutes and 1 seconds elapsed.  > Fim do MCGA   >>> Submetendo o Sistema SMNA_v3.0.0.t12717/SMG para o dia 2026061812   > Executando o GSI  [INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >>>> Carregando arquivos prepBufrs do NCEP  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/18 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : amsuabufrNCEP atmsbufrNCEP gpsrobufrNCEP satwndbufrNCEP [ OK ] link amsuabufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/18/gdas.t12z.1bamua.tm00.bufr_d ] [ OK ] link atmsbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/18/gdas.t12z.atms.tm00.bufr_d ] [ OK ] link gpsrobufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/18/gdas.t12z.gpsro.tm00.bufr_d.nr ] [ OK ] link satwndbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/18/gdas.t12z.satwnd.tm00.bufr_d ]  Found 4 observation files from NCEP to use  >>>> Carregando arquivos prepBufrs do INPE  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/18 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : prepbufrINPE [ OK ] link prepbufrINPE @ [ /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/18/inpe.t12z.prepbufr.nr ]  Found 1 observation files from INPE to use Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061806/GFCTCPT20260618062026061809F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061806/GFCTCPT20260618062026061812F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061806/GFCTCPT20260618062026061815F.fct.TQ0299L064 Copy of Public fixed files cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061806/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061812/satbias_in cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061806/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061812/satbias_pc Entrando no ciclo de BcCycles para 0  Running GSI  using /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/gsiparm.anl to setup GSI run  [ OK ] >>> mergeDiagFiles Merging diag files amsua_metop-b, outer loop 01 [ OK ] Merging diag files amsua_metop-b, outer loop 03 [ OK ] Merging diag files amsua_metop-c, outer loop 01 [ OK ] Merging diag files amsua_metop-c, outer loop 03 [ OK ] Merging diag files atms_n20, outer loop 01 [ OK ] Merging diag files atms_n20, outer loop 03 [ OK ] Merging diag files atms_n21, outer loop 01 [ OK ] Merging diag files atms_n21, outer loop 03 [ OK ] Merging diag files atms_npp, outer loop 01 [ OK ] Merging diag files atms_npp, outer loop 03 [ OK ] Merging diag files conv, outer loop 01 [ OK ] Merging diag files conv, outer loop 03 [ OK ] Merging diag files obs, outer loop setup [ OK ] >>> mergeDiagFiles do diagnostico da radiβncia /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061812/diag_amsua_metop-b_01.2026061812 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061812/diag_amsua_metop-b_03.2026061812 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061812/diag_amsua_metop-c_01.2026061812 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061812/diag_amsua_metop-c_03.2026061812 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061812/diag_atms_n20_01.2026061812 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061812/diag_atms_n20_03.2026061812 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061812/diag_atms_n21_01.2026061812 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061812/diag_atms_n21_03.2026061812 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061812/diag_atms_npp_01.2026061812 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061812/diag_atms_npp_03.2026061812 mv: cannot move '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061812/diag' to '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061812/diag': File exists cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061812/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061812/. cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061812/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061812/. 14 minutes and 28 seconds elapsed.  > Fim do GSI  Testando os dados convencionais do CPTEC se ok: 2026061812 >>>>>>> Verificar dados assimilados.... /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/./runPythonCheck.py:3: DeprecationWarning: You are importing the legacy package 'gsidiag'. This interface is deprecated and will be removed in a future major release. Please migrate to 'readDiag.open.open_diagnostic' and the DiagnosticAPI. import gsidiag as gd 2026-06-25 23:44:32,551 readDiag INFO read_conv_file completed in 0.922s ##### Lendo o arquivo do OMF: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061812/diag_conv_01.2026061812 ##### Lista das variaveis disponiveis no OMF (pfileinfo): Variable Name : uv └── kx => 240 242 243 244 245 246 247 250 252 253 254 255 260 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 2026-06-25 23:44:36,591 readDiag INFO read_conv_file completed in 0.811s ##### Lendo o arquivo do OMA: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061812/diag_conv_03.2026061812 ##### Lista das variaveis disponiveis no OMA (pfileinfo): Variable Name : uv └── kx => 240 242 243 244 245 246 247 250 252 253 254 255 260 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 ----------------- Fim do teste do Python --------------------  > Executando o MCGA  /bin/bash /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/scripts/run_model.sh 2026061812 2026061821 CPT 299 64 64 No This will run on EGEON Cluster ...[INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >> Submetendo o MCGA: 2026061812  > Resolucao (espectral) :  TQ0299L064  > Resolucao (grade) :  G00450L064   > Condicao Inicial :  2026061812  > Previsao ate :  2026061821  > Pos-proc. Ativado :  no  Running BAM Pre-process for 2026061812  SmoothTopo = .TRUE.  set PREFIX =  SMT [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061812 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [RUN] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [NOT] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [NOT] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [NOT] SSTWeeklyNCEP [NOT] SSTWeekly [NOT] SNOWWeekly [NOT] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [NOT] TopographyGradient [INFO] Procurando an?lise NCEP para: 2026061812 [INFO] Detected: EGEON Cluster [INFO] Caminhos de busca: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain:/oper/dados/ioper/tempo/NCEP/input/2026/06/18/12 [INFO] Verificando diret?rio: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain [INFO] Arquivo encontrado: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gblav.T12Z.atmanl.netcdf.2026061812  >>>> WARNNING <<<< Using  gblav  anl file GDASType was set as: Netcdf  Is this correct?  >>>>>>>>><<<<<<<<< ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061812_1782441882  Running Pre-processes at egeon  Running PreBAM  [ OK ] 1st call to runPre. Status: 0  Running BAM Pre-process for 2026061812 [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061812 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [NOT] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [RUN] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [RUN] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [RUN] SSTWeeklyNCEP [RUN] SSTWeekly [NOT] SNOWWeekly [RUN] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [RUN] TopographyGradient [INFO] Detected: EGEON Cluster [INFO] Searching SST on egeon [INFO] Target SST date: 2026061812 [INFO] Attempting SST retrieval (try 0) [FAIL: No valid SST file found for 2026061812] [INFO] Trying earlier time step: 2026061806 [INFO] Checking if SST was previously converted... [INFO] Reusing previous SST file: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas1.T06Z.sstgrd.2026061806 [INFO] Detected: EGEON Cluster  Getting Soil Moisture file for: 2026061812 Search 0 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/GL_SM.GPNR.2026061812.vfm ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061812_1782442341  Running Pre-processes at egeon  Running PreBAM  [ OK ] 2nd call to runPre. Status: 0 [INFO] Detected: EGEON Cluster running :: runModel -das -v -np 64 -N 16 -d 8 -t 299 -l 64 -I 2026061812 -F 2026061821 -W 2026061821 -px CPT -py CPT -s sstwkl -ts 3 -r -tr 6 -i -3 -s sstwkl [INFO] Detected: EGEON Cluster  Running BAM  [ OK ] 8 minutes and 34 seconds elapsed.  > Fim do MCGA   >>> Submetendo o Sistema SMNA_v3.0.0.t12717/SMG para o dia 2026061818   > Executando o GSI  [INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >>>> Carregando arquivos prepBufrs do NCEP  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/18 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : amsuabufrNCEP atmsbufrNCEP gpsrobufrNCEP satwndbufrNCEP [ OK ] link amsuabufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/18/gdas.t18z.1bamua.tm00.bufr_d ] [ OK ] link atmsbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/18/gdas.t18z.atms.tm00.bufr_d ] [ OK ] link gpsrobufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/18/gdas.t18z.gpsro.tm00.bufr_d.nr ] [ OK ] link satwndbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/18/gdas.t18z.satwnd.tm00.bufr_d ]  Found 4 observation files from NCEP to use  >>>> Carregando arquivos prepBufrs do INPE  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/18 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : prepbufrINPE [ OK ] link prepbufrINPE @ [ /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/18/inpe.t18z.prepbufr.nr ]  Found 1 observation files from INPE to use Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061812/GFCTCPT20260618122026061815F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061812/GFCTCPT20260618122026061818F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061812/GFCTCPT20260618122026061821F.fct.TQ0299L064 Copy of Public fixed files cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061812/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061818/satbias_in cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061812/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061818/satbias_pc Entrando no ciclo de BcCycles para 0  Running GSI  using /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/gsiparm.anl to setup GSI run  [ OK ] >>> mergeDiagFiles Merging diag files amsua_metop-b, outer loop 01 [ OK ] Merging diag files amsua_metop-b, outer loop 03 [ OK ] Merging diag files amsua_metop-c, outer loop 01 [ OK ] Merging diag files amsua_metop-c, outer loop 03 [ OK ] Merging diag files atms_n20, outer loop 01 [ OK ] Merging diag files atms_n20, outer loop 03 [ OK ] Merging diag files atms_n21, outer loop 01 [ OK ] Merging diag files atms_n21, outer loop 03 [ OK ] Merging diag files atms_npp, outer loop 01 [ OK ] Merging diag files atms_npp, outer loop 03 [ OK ] Merging diag files conv, outer loop 01 [ OK ] Merging diag files conv, outer loop 03 [ OK ] Merging diag files obs, outer loop setup [ OK ] >>> mergeDiagFiles do diagnostico da radiβncia /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061818/diag_amsua_metop-b_01.2026061818 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061818/diag_amsua_metop-b_03.2026061818 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061818/diag_amsua_metop-c_01.2026061818 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061818/diag_amsua_metop-c_03.2026061818 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061818/diag_atms_n20_01.2026061818 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061818/diag_atms_n20_03.2026061818 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061818/diag_atms_n21_01.2026061818 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061818/diag_atms_n21_03.2026061818 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061818/diag_atms_npp_01.2026061818 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061818/diag_atms_npp_03.2026061818 mv: cannot move '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061818/diag' to '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061818/diag': File exists cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061818/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061818/. cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061818/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061818/. 13 minutes and 58 seconds elapsed.  > Fim do GSI  Testando os dados convencionais do CPTEC se ok: 2026061818 >>>>>>> Verificar dados assimilados.... /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/./runPythonCheck.py:3: DeprecationWarning: You are importing the legacy package 'gsidiag'. This interface is deprecated and will be removed in a future major release. Please migrate to 'readDiag.open.open_diagnostic' and the DiagnosticAPI. import gsidiag as gd 2026-06-26 00:07:14,503 readDiag INFO read_conv_file completed in 0.972s ##### Lendo o arquivo do OMF: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061818/diag_conv_01.2026061818 ##### Lista das variaveis disponiveis no OMF (pfileinfo): Variable Name : uv └── kx => 240 242 243 244 245 246 247 250 252 253 254 255 260 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 2026-06-26 00:07:18,074 readDiag INFO read_conv_file completed in 0.879s ##### Lendo o arquivo do OMA: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061818/diag_conv_03.2026061818 ##### Lista das variaveis disponiveis no OMA (pfileinfo): Variable Name : uv └── kx => 240 242 243 244 245 246 247 250 252 253 254 255 260 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 ----------------- Fim do teste do Python --------------------  > Executando o MCGA  /bin/bash /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/scripts/run_model.sh 2026061818 2026061903 CPT 299 64 64 No This will run on EGEON Cluster ...[INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >> Submetendo o MCGA: 2026061818  > Resolucao (espectral) :  TQ0299L064  > Resolucao (grade) :  G00450L064   > Condicao Inicial :  2026061818  > Previsao ate :  2026061903  > Pos-proc. Ativado :  no  Running BAM Pre-process for 2026061818  SmoothTopo = .TRUE.  set PREFIX =  SMT [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061818 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [RUN] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [NOT] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [NOT] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [NOT] SSTWeeklyNCEP [NOT] SSTWeekly [NOT] SNOWWeekly [NOT] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [NOT] TopographyGradient [INFO] Procurando an?lise NCEP para: 2026061818 [INFO] Detected: EGEON Cluster [INFO] Caminhos de busca: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain:/oper/dados/ioper/tempo/NCEP/input/2026/06/18/18 [INFO] Verificando diret?rio: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain [INFO] Arquivo encontrado: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gblav.T18Z.atmanl.netcdf.2026061818  >>>> WARNNING <<<< Using  gblav  anl file GDASType was set as: Netcdf  Is this correct?  >>>>>>>>><<<<<<<<< ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061818_1782443242  Running Pre-processes at egeon  Running PreBAM  [ OK ] 1st call to runPre. Status: 0  Running BAM Pre-process for 2026061818 [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061818 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [NOT] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [RUN] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [RUN] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [RUN] SSTWeeklyNCEP [RUN] SSTWeekly [NOT] SNOWWeekly [RUN] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [RUN] TopographyGradient [INFO] Detected: EGEON Cluster [INFO] Searching SST on egeon [INFO] Target SST date: 2026061818 [INFO] Attempting SST retrieval (try 0) [FAIL: No valid SST file found for 2026061818] [INFO] Trying earlier time step: 2026061812 [INFO] Checking if SST was previously converted... [INFO] Reusing previous SST file: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas1.T12Z.sstgrd.2026061812 [INFO] Detected: EGEON Cluster  Getting Soil Moisture file for: 2026061818 Search 0 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/GL_SM.GPNR.2026061818.vfm ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061818_1782443669  Running Pre-processes at egeon  Running PreBAM  [ OK ] 2nd call to runPre. Status: 0 [INFO] Detected: EGEON Cluster running :: runModel -das -v -np 64 -N 16 -d 8 -t 299 -l 64 -I 2026061818 -F 2026061903 -W 2026061903 -px CPT -py CPT -s sstwkl -ts 3 -r -tr 6 -i -3 -s sstwkl [INFO] Detected: EGEON Cluster  Running BAM  [ OK ] 8 minutes and 1 seconds elapsed.  > Fim do MCGA   >>> Submetendo o Sistema SMNA_v3.0.0.t12717/SMG para o dia 2026061900   > Executando o GSI  [INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >>>> Carregando arquivos prepBufrs do NCEP  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/19 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : amsuabufrNCEP atmsbufrNCEP gpsrobufrNCEP satwndbufrNCEP [ OK ] link amsuabufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/19/gdas.t00z.1bamua.tm00.bufr_d ] [ OK ] link atmsbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/19/gdas.t00z.atms.tm00.bufr_d ] [ OK ] link gpsrobufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/19/gdas.t00z.gpsro.tm00.bufr_d.nr ] [ OK ] link satwndbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/19/gdas.t00z.satwnd.tm00.bufr_d ]  Found 4 observation files from NCEP to use  >>>> Carregando arquivos prepBufrs do INPE  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/19 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : prepbufrINPE [ OK ] link prepbufrINPE @ [ /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/19/inpe.t00z.prepbufr.nr ]  Found 1 observation files from INPE to use Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061818/GFCTCPT20260618182026061821F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061818/GFCTCPT20260618182026061900F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061818/GFCTCPT20260618182026061903F.fct.TQ0299L064 Copy of Public fixed files cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061818/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061900/satbias_in cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061818/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061900/satbias_pc Entrando no ciclo de BcCycles para 0  Running GSI  using /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/gsiparm.anl to setup GSI run  [ OK ] >>> mergeDiagFiles Merging diag files amsua_metop-b, outer loop 01 [ OK ] Merging diag files amsua_metop-b, outer loop 03 [ OK ] Merging diag files amsua_metop-c, outer loop 01 [ OK ] Merging diag files amsua_metop-c, outer loop 03 [ OK ] Merging diag files atms_n20, outer loop 01 [ OK ] Merging diag files atms_n20, outer loop 03 [ OK ] Merging diag files atms_n21, outer loop 01 [ OK ] Merging diag files atms_n21, outer loop 03 [ OK ] Merging diag files atms_npp, outer loop 01 [ OK ] Merging diag files atms_npp, outer loop 03 [ OK ] Merging diag files conv, outer loop 01 [ OK ] Merging diag files conv, outer loop 03 [ OK ] Merging diag files obs, outer loop setup [ OK ] >>> mergeDiagFiles do diagnostico da radiβncia /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061900/diag_amsua_metop-b_01.2026061900 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061900/diag_amsua_metop-b_03.2026061900 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061900/diag_amsua_metop-c_01.2026061900 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061900/diag_amsua_metop-c_03.2026061900 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061900/diag_atms_n20_01.2026061900 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061900/diag_atms_n20_03.2026061900 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061900/diag_atms_n21_01.2026061900 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061900/diag_atms_n21_03.2026061900 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061900/diag_atms_npp_01.2026061900 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061900/diag_atms_npp_03.2026061900 mv: cannot move '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061900/diag' to '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061900/diag': File exists cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061900/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061900/. cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061900/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061900/. 15 minutes and 5 seconds elapsed.  > Fim do GSI  Testando os dados convencionais do CPTEC se ok: 2026061900 >>>>>>> Verificar dados assimilados.... /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/./runPythonCheck.py:3: DeprecationWarning: You are importing the legacy package 'gsidiag'. This interface is deprecated and will be removed in a future major release. Please migrate to 'readDiag.open.open_diagnostic' and the DiagnosticAPI. import gsidiag as gd 2026-06-26 00:30:30,125 readDiag INFO read_conv_file completed in 1.077s ##### Lendo o arquivo do OMF: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061900/diag_conv_01.2026061900 ##### Lista das variaveis disponiveis no OMF (pfileinfo): Variable Name : ps └── kx => 120 180 181 187 Variable Name : t └── kx => 130 180 181 183 187 Variable Name : uv └── kx => 220 229 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 Variable Name : q └── kx => 180 2026-06-26 00:30:34,364 readDiag INFO read_conv_file completed in 0.933s ##### Lendo o arquivo do OMA: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061900/diag_conv_03.2026061900 ##### Lista das variaveis disponiveis no OMA (pfileinfo): Variable Name : ps └── kx => 120 180 181 187 Variable Name : t └── kx => 130 180 181 183 187 Variable Name : uv └── kx => 220 229 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 Variable Name : q └── kx => 180 ----------------- Fim do teste do Python --------------------  > Executando o MCGA  /bin/bash /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/scripts/run_model.sh 2026061900 2026061909 CPT 299 64 64 No This will run on EGEON Cluster ...[INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >> Submetendo o MCGA: 2026061900  > Resolucao (espectral) :  TQ0299L064  > Resolucao (grade) :  G00450L064   > Condicao Inicial :  2026061900  > Previsao ate :  2026061909  > Pos-proc. Ativado :  no  Running BAM Pre-process for 2026061900  SmoothTopo = .TRUE.  set PREFIX =  SMT [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061900 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [RUN] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [NOT] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [NOT] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [NOT] SSTWeeklyNCEP [NOT] SSTWeekly [NOT] SNOWWeekly [NOT] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [NOT] TopographyGradient [INFO] Procurando an?lise NCEP para: 2026061900 [INFO] Detected: EGEON Cluster [INFO] Caminhos de busca: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain:/oper/dados/ioper/tempo/NCEP/input/2026/06/19/00 [INFO] Verificando diret?rio: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain [INFO] Arquivo encontrado: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas.T00Z.atmanl.netcdf.2026061900 ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061900_1782444638  Running Pre-processes at egeon  Running PreBAM  [ OK ] 1st call to runPre. Status: 0  Running BAM Pre-process for 2026061900 [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061900 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [NOT] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [RUN] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [RUN] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [RUN] SSTWeeklyNCEP [RUN] SSTWeekly [NOT] SNOWWeekly [RUN] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [RUN] TopographyGradient [INFO] Detected: EGEON Cluster [INFO] Searching SST on egeon [INFO] Target SST date: 2026061900 [INFO] Attempting SST retrieval (try 0) [INFO] Found file: /oper/dados/ioper/tempo/NCEP/input/2026/06/19/00/rtgssthr_grb_0.083.grib2.20260619 [INFO] Detected GRIB2 format (1 records) [GRIB2 CONVERSION:] SUCCESS [INFO] Detected: EGEON Cluster  Getting Soil Moisture file for: 2026061900 Search 0 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/GL_SM.GPNR.2026061900.vfm ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061900_1782445065  Running Pre-processes at egeon  Running PreBAM  [ OK ] 2nd call to runPre. Status: 0 [INFO] Detected: EGEON Cluster running :: runModel -das -v -np 64 -N 16 -d 8 -t 299 -l 64 -I 2026061900 -F 2026061909 -W 2026061909 -px CPT -py CPT -s sstwkl -ts 3 -r -tr 6 -i -3 -s sstwkl [INFO] Detected: EGEON Cluster  Running BAM  [ OK ] 8 minutes and 4 seconds elapsed.  > Fim do MCGA   >>> Submetendo o Sistema SMNA_v3.0.0.t12717/SMG para o dia 2026061906   > Executando o GSI  [INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >>>> Carregando arquivos prepBufrs do NCEP  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/19 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : amsuabufrNCEP atmsbufrNCEP gpsrobufrNCEP satwndbufrNCEP [ OK ] link amsuabufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/19/gdas.t06z.1bamua.tm00.bufr_d ] [ OK ] link atmsbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/19/gdas.t06z.atms.tm00.bufr_d ] [ OK ] link gpsrobufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/19/gdas.t06z.gpsro.tm00.bufr_d.nr ] [ OK ] link satwndbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/19/gdas.t06z.satwnd.tm00.bufr_d ]  Found 4 observation files from NCEP to use  >>>> Carregando arquivos prepBufrs do INPE  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/19 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : prepbufrINPE [ OK ] link prepbufrINPE @ [ /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/19/inpe.t06z.prepbufr.nr ]  Found 1 observation files from INPE to use Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061900/GFCTCPT20260619002026061903F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061900/GFCTCPT20260619002026061906F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061900/GFCTCPT20260619002026061909F.fct.TQ0299L064 Copy of Public fixed files cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061900/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061906/satbias_in cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061900/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061906/satbias_pc Entrando no ciclo de BcCycles para 0  Running GSI  using /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/gsiparm.anl to setup GSI run  [ OK ] >>> mergeDiagFiles Merging diag files amsua_metop-b, outer loop 01 [ OK ] Merging diag files amsua_metop-b, outer loop 03 [ OK ] Merging diag files amsua_metop-c, outer loop 01 [ OK ] Merging diag files amsua_metop-c, outer loop 03 [ OK ] Merging diag files atms_n20, outer loop 01 [ OK ] Merging diag files atms_n20, outer loop 03 [ OK ] Merging diag files atms_n21, outer loop 01 [ OK ] Merging diag files atms_n21, outer loop 03 [ OK ] Merging diag files atms_npp, outer loop 01 [ OK ] Merging diag files atms_npp, outer loop 03 [ OK ] Merging diag files conv, outer loop 01 [ OK ] Merging diag files conv, outer loop 03 [ OK ] Merging diag files obs, outer loop setup [ OK ] >>> mergeDiagFiles do diagnostico da radiβncia /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061906/diag_amsua_metop-b_01.2026061906 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061906/diag_amsua_metop-b_03.2026061906 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061906/diag_amsua_metop-c_01.2026061906 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061906/diag_amsua_metop-c_03.2026061906 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061906/diag_atms_n20_01.2026061906 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061906/diag_atms_n20_03.2026061906 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061906/diag_atms_n21_01.2026061906 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061906/diag_atms_n21_03.2026061906 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061906/diag_atms_npp_01.2026061906 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061906/diag_atms_npp_03.2026061906 mv: cannot move '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061906/diag' to '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061906/diag': File exists cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061906/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061906/. cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061906/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061906/. 13 minutes and 57 seconds elapsed.  > Fim do GSI  Testando os dados convencionais do CPTEC se ok: 2026061906 >>>>>>> Verificar dados assimilados.... /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/./runPythonCheck.py:3: DeprecationWarning: You are importing the legacy package 'gsidiag'. This interface is deprecated and will be removed in a future major release. Please migrate to 'readDiag.open.open_diagnostic' and the DiagnosticAPI. import gsidiag as gd 2026-06-26 00:52:41,380 readDiag INFO read_conv_file completed in 1.081s ##### Lendo o arquivo do OMF: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061906/diag_conv_01.2026061906 ##### Lista das variaveis disponiveis no OMF (pfileinfo): Variable Name : ps └── kx => 120 180 181 183 187 Variable Name : t └── kx => 130 180 181 183 187 Variable Name : uv └── kx => 220 229 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 Variable Name : q └── kx => 180 2026-06-26 00:52:45,851 readDiag INFO read_conv_file completed in 0.979s ##### Lendo o arquivo do OMA: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061906/diag_conv_03.2026061906 ##### Lista das variaveis disponiveis no OMA (pfileinfo): Variable Name : ps └── kx => 120 180 181 183 187 Variable Name : t └── kx => 130 180 181 183 187 Variable Name : uv └── kx => 220 229 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 Variable Name : q └── kx => 180 ----------------- Fim do teste do Python --------------------  > Executando o MCGA  /bin/bash /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/scripts/run_model.sh 2026061906 2026061915 CPT 299 64 64 No This will run on EGEON Cluster ...[INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >> Submetendo o MCGA: 2026061906  > Resolucao (espectral) :  TQ0299L064  > Resolucao (grade) :  G00450L064   > Condicao Inicial :  2026061906  > Previsao ate :  2026061915  > Pos-proc. Ativado :  no  Running BAM Pre-process for 2026061906  SmoothTopo = .TRUE.  set PREFIX =  SMT [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061906 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [RUN] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [NOT] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [NOT] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [NOT] SSTWeeklyNCEP [NOT] SSTWeekly [NOT] SNOWWeekly [NOT] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [NOT] TopographyGradient [INFO] Procurando an?lise NCEP para: 2026061906 [INFO] Detected: EGEON Cluster [INFO] Caminhos de busca: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain:/oper/dados/ioper/tempo/NCEP/input/2026/06/19/06 [INFO] Verificando diret?rio: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain [INFO] Arquivo encontrado: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas.T06Z.atmanl.netcdf.2026061906 ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061906_1782445972  Running Pre-processes at egeon  Running PreBAM  [ OK ] 1st call to runPre. Status: 0  Running BAM Pre-process for 2026061906 [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061906 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [NOT] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [RUN] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [RUN] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [RUN] SSTWeeklyNCEP [RUN] SSTWeekly [NOT] SNOWWeekly [RUN] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [RUN] TopographyGradient [INFO] Detected: EGEON Cluster [INFO] Searching SST on egeon [INFO] Target SST date: 2026061906 [INFO] Attempting SST retrieval (try 0) [FAIL: No valid SST file found for 2026061906] [INFO] Trying earlier time step: 2026061900 [INFO] Checking if SST was previously converted... [INFO] Reusing previous SST file: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas1.T00Z.sstgrd.2026061900 [INFO] Detected: EGEON Cluster  Getting Soil Moisture file for: 2026061906 Search 0 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/GL_SM.GPNR.2026061906.vfm ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061906_1782446431  Running Pre-processes at egeon  Running PreBAM  [ OK ] 2nd call to runPre. Status: 0 [INFO] Detected: EGEON Cluster running :: runModel -das -v -np 64 -N 16 -d 8 -t 299 -l 64 -I 2026061906 -F 2026061915 -W 2026061915 -px CPT -py CPT -s sstwkl -ts 3 -r -tr 6 -i -3 -s sstwkl [INFO] Detected: EGEON Cluster  Running BAM  [ OK ] 9 minutes and 6 seconds elapsed.  > Fim do MCGA   >>> Submetendo o Sistema SMNA_v3.0.0.t12717/SMG para o dia 2026061912   > Executando o GSI  [INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >>>> Carregando arquivos prepBufrs do NCEP  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/19 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : amsuabufrNCEP atmsbufrNCEP gpsrobufrNCEP satwndbufrNCEP [ OK ] link amsuabufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/19/gdas.t12z.1bamua.tm00.bufr_d ] [ OK ] link atmsbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/19/gdas.t12z.atms.tm00.bufr_d ] [ OK ] link gpsrobufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/19/gdas.t12z.gpsro.tm00.bufr_d.nr ] [ OK ] link satwndbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/19/gdas.t12z.satwnd.tm00.bufr_d ]  Found 4 observation files from NCEP to use  >>>> Carregando arquivos prepBufrs do INPE  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/19 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : prepbufrINPE [ OK ] link prepbufrINPE @ [ /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/19/inpe.t12z.prepbufr.nr ]  Found 1 observation files from INPE to use Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061906/GFCTCPT20260619062026061909F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061906/GFCTCPT20260619062026061912F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061906/GFCTCPT20260619062026061915F.fct.TQ0299L064 Copy of Public fixed files cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061906/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061912/satbias_in cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061906/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061912/satbias_pc Entrando no ciclo de BcCycles para 0  Running GSI  using /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/gsiparm.anl to setup GSI run  [ OK ] >>> mergeDiagFiles Merging diag files amsua_metop-b, outer loop 01 [ OK ] Merging diag files amsua_metop-b, outer loop 03 [ OK ] Merging diag files amsua_metop-c, outer loop 01 [ OK ] Merging diag files amsua_metop-c, outer loop 03 [ OK ] Merging diag files atms_n20, outer loop 01 [ OK ] Merging diag files atms_n20, outer loop 03 [ OK ] Merging diag files atms_n21, outer loop 01 [ OK ] Merging diag files atms_n21, outer loop 03 [ OK ] Merging diag files atms_npp, outer loop 01 [ OK ] Merging diag files atms_npp, outer loop 03 [ OK ] Merging diag files conv, outer loop 01 [ OK ] Merging diag files conv, outer loop 03 [ OK ] Merging diag files obs, outer loop setup [ OK ] >>> mergeDiagFiles do diagnostico da radiβncia /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061912/diag_amsua_metop-b_01.2026061912 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061912/diag_amsua_metop-b_03.2026061912 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061912/diag_amsua_metop-c_01.2026061912 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061912/diag_amsua_metop-c_03.2026061912 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061912/diag_atms_n20_01.2026061912 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061912/diag_atms_n20_03.2026061912 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061912/diag_atms_n21_01.2026061912 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061912/diag_atms_n21_03.2026061912 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061912/diag_atms_npp_01.2026061912 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061912/diag_atms_npp_03.2026061912 mv: cannot move '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061912/diag' to '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061912/diag': File exists cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061912/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061912/. cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061912/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061912/. 15 minutes and 3 seconds elapsed.  > Fim do GSI  Testando os dados convencionais do CPTEC se ok: 2026061912 >>>>>>> Verificar dados assimilados.... /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/./runPythonCheck.py:3: DeprecationWarning: You are importing the legacy package 'gsidiag'. This interface is deprecated and will be removed in a future major release. Please migrate to 'readDiag.open.open_diagnostic' and the DiagnosticAPI. import gsidiag as gd 2026-06-26 01:17:01,637 readDiag INFO read_conv_file completed in 0.954s ##### Lendo o arquivo do OMF: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061912/diag_conv_01.2026061912 ##### Lista das variaveis disponiveis no OMF (pfileinfo): Variable Name : uv └── kx => 240 242 243 244 245 246 247 250 252 253 254 255 260 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 2026-06-26 01:17:05,743 readDiag INFO read_conv_file completed in 1.027s ##### Lendo o arquivo do OMA: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061912/diag_conv_03.2026061912 ##### Lista das variaveis disponiveis no OMA (pfileinfo): Variable Name : uv └── kx => 240 242 243 244 245 246 247 250 252 253 254 255 260 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 ----------------- Fim do teste do Python --------------------  > Executando o MCGA  /bin/bash /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/scripts/run_model.sh 2026061912 2026061921 CPT 299 64 64 No This will run on EGEON Cluster ...[INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >> Submetendo o MCGA: 2026061912  > Resolucao (espectral) :  TQ0299L064  > Resolucao (grade) :  G00450L064   > Condicao Inicial :  2026061912  > Previsao ate :  2026061921  > Pos-proc. Ativado :  no  Running BAM Pre-process for 2026061912  SmoothTopo = .TRUE.  set PREFIX =  SMT [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061912 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [RUN] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [NOT] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [NOT] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [NOT] SSTWeeklyNCEP [NOT] SSTWeekly [NOT] SNOWWeekly [NOT] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [NOT] TopographyGradient [INFO] Procurando an?lise NCEP para: 2026061912 [INFO] Detected: EGEON Cluster [INFO] Caminhos de busca: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain:/oper/dados/ioper/tempo/NCEP/input/2026/06/19/12 [INFO] Verificando diret?rio: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain [INFO] Arquivo encontrado: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gblav.T12Z.atmanl.netcdf.2026061912  >>>> WARNNING <<<< Using  gblav  anl file GDASType was set as: Netcdf  Is this correct?  >>>>>>>>><<<<<<<<< ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061912_1782447430  Running Pre-processes at egeon  Running PreBAM  [ OK ] 1st call to runPre. Status: 0  Running BAM Pre-process for 2026061912 [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061912 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [NOT] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [RUN] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [RUN] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [RUN] SSTWeeklyNCEP [RUN] SSTWeekly [NOT] SNOWWeekly [RUN] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [RUN] TopographyGradient [INFO] Detected: EGEON Cluster [INFO] Searching SST on egeon [INFO] Target SST date: 2026061912 [INFO] Attempting SST retrieval (try 0) [FAIL: No valid SST file found for 2026061912] [INFO] Trying earlier time step: 2026061906 [INFO] Checking if SST was previously converted... [INFO] Reusing previous SST file: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas1.T06Z.sstgrd.2026061906 [INFO] Detected: EGEON Cluster  Getting Soil Moisture file for: 2026061912 Search 0 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/GL_SM.GPNR.2026061912.vfm ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061912_1782447857  Running Pre-processes at egeon  Running PreBAM  [ OK ] 2nd call to runPre. Status: 0 [INFO] Detected: EGEON Cluster running :: runModel -das -v -np 64 -N 16 -d 8 -t 299 -l 64 -I 2026061912 -F 2026061921 -W 2026061921 -px CPT -py CPT -s sstwkl -ts 3 -r -tr 6 -i -3 -s sstwkl [INFO] Detected: EGEON Cluster  Running BAM  [ OK ] 17 minutes and 37 seconds elapsed.  > Fim do MCGA   >>> Submetendo o Sistema SMNA_v3.0.0.t12717/SMG para o dia 2026061918   > Executando o GSI  [INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >>>> Carregando arquivos prepBufrs do NCEP  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/19 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : amsuabufrNCEP atmsbufrNCEP gpsrobufrNCEP satwndbufrNCEP [ OK ] link amsuabufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/19/gdas.t18z.1bamua.tm00.bufr_d ] [ OK ] link atmsbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/19/gdas.t18z.atms.tm00.bufr_d ] [ OK ] link gpsrobufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/19/gdas.t18z.gpsro.tm00.bufr_d.nr ] [ OK ] link satwndbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/19/gdas.t18z.satwnd.tm00.bufr_d ]  Found 4 observation files from NCEP to use  >>>> Carregando arquivos prepBufrs do INPE  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/19 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : prepbufrINPE [ OK ] link prepbufrINPE @ [ /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/19/inpe.t18z.prepbufr.nr ]  Found 1 observation files from INPE to use Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061912/GFCTCPT20260619122026061915F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061912/GFCTCPT20260619122026061918F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061912/GFCTCPT20260619122026061921F.fct.TQ0299L064 Copy of Public fixed files cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061912/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061918/satbias_in cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061912/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061918/satbias_pc Entrando no ciclo de BcCycles para 0  Running GSI  using /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/gsiparm.anl to setup GSI run  [ OK ] >>> mergeDiagFiles Merging diag files amsua_metop-b, outer loop 01 [ OK ] Merging diag files amsua_metop-b, outer loop 03 [ OK ] Merging diag files amsua_metop-c, outer loop 01 [ OK ] Merging diag files amsua_metop-c, outer loop 03 [ OK ] Merging diag files atms_n20, outer loop 01 [ OK ] Merging diag files atms_n20, outer loop 03 [ OK ] Merging diag files atms_n21, outer loop 01 [ OK ] Merging diag files atms_n21, outer loop 03 [ OK ] Merging diag files atms_npp, outer loop 01 [ OK ] Merging diag files atms_npp, outer loop 03 [ OK ] Merging diag files conv, outer loop 01 [ OK ] Merging diag files conv, outer loop 03 [ OK ] Merging diag files obs, outer loop setup [ OK ] >>> mergeDiagFiles do diagnostico da radiβncia /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061918/diag_amsua_metop-b_01.2026061918 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061918/diag_amsua_metop-b_03.2026061918 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061918/diag_amsua_metop-c_01.2026061918 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061918/diag_amsua_metop-c_03.2026061918 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061918/diag_atms_n20_01.2026061918 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061918/diag_atms_n20_03.2026061918 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061918/diag_atms_n21_01.2026061918 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061918/diag_atms_n21_03.2026061918 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061918/diag_atms_npp_01.2026061918 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061918/diag_atms_npp_03.2026061918 mv: cannot move '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061918/diag' to '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061918/diag': File exists cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061918/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061918/. cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026061918/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061918/. 15 minutes and 0 seconds elapsed.  > Fim do GSI  Testando os dados convencionais do CPTEC se ok: 2026061918 >>>>>>> Verificar dados assimilados.... /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/./runPythonCheck.py:3: DeprecationWarning: You are importing the legacy package 'gsidiag'. This interface is deprecated and will be removed in a future major release. Please migrate to 'readDiag.open.open_diagnostic' and the DiagnosticAPI. import gsidiag as gd 2026-06-26 01:49:50,686 readDiag INFO read_conv_file completed in 0.814s ##### Lendo o arquivo do OMF: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061918/diag_conv_01.2026061918 ##### Lista das variaveis disponiveis no OMF (pfileinfo): Variable Name : uv └── kx => 240 242 243 244 245 246 247 250 252 253 254 255 260 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 2026-06-26 01:49:54,121 readDiag INFO read_conv_file completed in 0.804s ##### Lendo o arquivo do OMA: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061918/diag_conv_03.2026061918 ##### Lista das variaveis disponiveis no OMA (pfileinfo): Variable Name : uv └── kx => 240 242 243 244 245 246 247 250 252 253 254 255 260 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 ----------------- Fim do teste do Python --------------------  > Executando o MCGA  /bin/bash /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/scripts/run_model.sh 2026061918 2026062003 CPT 299 64 64 No This will run on EGEON Cluster ...[INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >> Submetendo o MCGA: 2026061918  > Resolucao (espectral) :  TQ0299L064  > Resolucao (grade) :  G00450L064   > Condicao Inicial :  2026061918  > Previsao ate :  2026062003  > Pos-proc. Ativado :  no  Running BAM Pre-process for 2026061918  SmoothTopo = .TRUE.  set PREFIX =  SMT [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061918 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [RUN] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [NOT] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [NOT] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [NOT] SSTWeeklyNCEP [NOT] SSTWeekly [NOT] SNOWWeekly [NOT] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [NOT] TopographyGradient [INFO] Procurando an?lise NCEP para: 2026061918 [INFO] Detected: EGEON Cluster [INFO] Caminhos de busca: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain:/oper/dados/ioper/tempo/NCEP/input/2026/06/19/18 [INFO] Verificando diret?rio: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain [INFO] Arquivo encontrado: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas.T18Z.atmanl.netcdf.2026061918 ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061918_1782449398  Running Pre-processes at egeon  Running PreBAM  [ OK ] 1st call to runPre. Status: 0  Running BAM Pre-process for 2026061918 [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026061918 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [NOT] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [RUN] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [RUN] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [RUN] SSTWeeklyNCEP [RUN] SSTWeekly [NOT] SNOWWeekly [RUN] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [RUN] TopographyGradient [INFO] Detected: EGEON Cluster [INFO] Searching SST on egeon [INFO] Target SST date: 2026061918 [INFO] Attempting SST retrieval (try 0) [FAIL: No valid SST file found for 2026061918] [INFO] Trying earlier time step: 2026061912 [INFO] Checking if SST was previously converted... [INFO] Reusing previous SST file: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas1.T12Z.sstgrd.2026061912 [INFO] Detected: EGEON Cluster  Getting Soil Moisture file for: 2026061918 Search 0 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/GL_SM.GPNR.2026061918.vfm ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026061918_1782449824  Running Pre-processes at egeon  Running PreBAM  [ OK ] 2nd call to runPre. Status: 0 [INFO] Detected: EGEON Cluster running :: runModel -das -v -np 64 -N 16 -d 8 -t 299 -l 64 -I 2026061918 -F 2026062003 -W 2026062003 -px CPT -py CPT -s sstwkl -ts 3 -r -tr 6 -i -3 -s sstwkl [INFO] Detected: EGEON Cluster  Running BAM  [ OK ] 17 minutes and 37 seconds elapsed.  > Fim do MCGA   >>> Submetendo o Sistema SMNA_v3.0.0.t12717/SMG para o dia 2026062000   > Executando o GSI  [INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >>>> Carregando arquivos prepBufrs do NCEP  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/20 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : amsuabufrNCEP atmsbufrNCEP gpsrobufrNCEP satwndbufrNCEP [ OK ] link amsuabufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/20/gdas.t00z.1bamua.tm00.bufr_d ] [ OK ] link atmsbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/20/gdas.t00z.atms.tm00.bufr_d ] [ OK ] link gpsrobufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/20/gdas.t00z.gpsro.tm00.bufr_d.nr ] [ OK ] link satwndbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/20/gdas.t00z.satwnd.tm00.bufr_d ]  Found 4 observation files from NCEP to use  >>>> Carregando arquivos prepBufrs do INPE  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/20 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : prepbufrINPE [ OK ] link prepbufrINPE @ [ /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/20/inpe.t00z.prepbufr.nr ]  Found 1 observation files from INPE to use Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061918/GFCTCPT20260619182026061921F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061918/GFCTCPT20260619182026062000F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026061918/GFCTCPT20260619182026062003F.fct.TQ0299L064 Copy of Public fixed files cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061918/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062000/satbias_in cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026061918/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062000/satbias_pc Entrando no ciclo de BcCycles para 0  Running GSI  using /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/gsiparm.anl to setup GSI run  [ OK ] >>> mergeDiagFiles Merging diag files amsua_metop-b, outer loop 01 [ OK ] Merging diag files amsua_metop-b, outer loop 03 [ OK ] Merging diag files amsua_metop-c, outer loop 01 [ OK ] Merging diag files amsua_metop-c, outer loop 03 [ OK ] Merging diag files atms_n20, outer loop 01 [ OK ] Merging diag files atms_n20, outer loop 03 [ OK ] Merging diag files atms_n21, outer loop 01 [ OK ] Merging diag files atms_n21, outer loop 03 [ OK ] Merging diag files atms_npp, outer loop 01 [ OK ] Merging diag files atms_npp, outer loop 03 [ OK ] Merging diag files conv, outer loop 01 [ OK ] Merging diag files conv, outer loop 03 [ OK ] Merging diag files obs, outer loop setup [ OK ] >>> mergeDiagFiles do diagnostico da radiβncia /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062000/diag_amsua_metop-b_01.2026062000 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062000/diag_amsua_metop-b_03.2026062000 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062000/diag_amsua_metop-c_01.2026062000 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062000/diag_amsua_metop-c_03.2026062000 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062000/diag_atms_n20_01.2026062000 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062000/diag_atms_n20_03.2026062000 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062000/diag_atms_n21_01.2026062000 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062000/diag_atms_n21_03.2026062000 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062000/diag_atms_npp_01.2026062000 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062000/diag_atms_npp_03.2026062000 mv: cannot move '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062000/diag' to '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062000/diag': File exists cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062000/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062000/. cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062000/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062000/. 15 minutes and 2 seconds elapsed.  > Fim do GSI  Testando os dados convencionais do CPTEC se ok: 2026062000 >>>>>>> Verificar dados assimilados.... /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/./runPythonCheck.py:3: DeprecationWarning: You are importing the legacy package 'gsidiag'. This interface is deprecated and will be removed in a future major release. Please migrate to 'readDiag.open.open_diagnostic' and the DiagnosticAPI. import gsidiag as gd 2026-06-26 02:22:38,558 readDiag INFO read_conv_file completed in 1.045s ##### Lendo o arquivo do OMF: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062000/diag_conv_01.2026062000 ##### Lista das variaveis disponiveis no OMF (pfileinfo): Variable Name : ps └── kx => 120 180 181 187 Variable Name : t └── kx => 120 130 180 181 183 187 Variable Name : uv └── kx => 220 229 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 Variable Name : q └── kx => 120 180 2026-06-26 02:22:42,687 readDiag INFO read_conv_file completed in 0.895s ##### Lendo o arquivo do OMA: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062000/diag_conv_03.2026062000 ##### Lista das variaveis disponiveis no OMA (pfileinfo): Variable Name : ps └── kx => 120 180 181 187 Variable Name : t └── kx => 120 130 180 181 183 187 Variable Name : uv └── kx => 220 229 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 Variable Name : q └── kx => 120 180 ----------------- Fim do teste do Python --------------------  > Executando o MCGA  /bin/bash /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/scripts/run_model.sh 2026062000 2026062009 CPT 299 64 64 No This will run on EGEON Cluster ...[INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >> Submetendo o MCGA: 2026062000  > Resolucao (espectral) :  TQ0299L064  > Resolucao (grade) :  G00450L064   > Condicao Inicial :  2026062000  > Previsao ate :  2026062009  > Pos-proc. Ativado :  no  Running BAM Pre-process for 2026062000  SmoothTopo = .TRUE.  set PREFIX =  SMT [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026062000 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [RUN] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [NOT] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [NOT] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [NOT] SSTWeeklyNCEP [NOT] SSTWeekly [NOT] SNOWWeekly [NOT] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [NOT] TopographyGradient [INFO] Procurando an?lise NCEP para: 2026062000 [INFO] Detected: EGEON Cluster [INFO] Caminhos de busca: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain:/oper/dados/ioper/tempo/NCEP/input/2026/06/20/00 [INFO] Verificando diret?rio: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain [INFO] Arquivo encontrado: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas.T00Z.atmanl.netcdf.2026062000 ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026062000_1782451367  Running Pre-processes at egeon  Running PreBAM  [ OK ] 1st call to runPre. Status: 0  Running BAM Pre-process for 2026062000 [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026062000 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [NOT] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [RUN] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [RUN] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [RUN] SSTWeeklyNCEP [RUN] SSTWeekly [NOT] SNOWWeekly [RUN] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [RUN] TopographyGradient [INFO] Detected: EGEON Cluster [INFO] Searching SST on egeon [INFO] Target SST date: 2026062000 [INFO] Attempting SST retrieval (try 0) [INFO] Found file: /oper/dados/ioper/tempo/NCEP/input/2026/06/20/00/rtgssthr_grb_0.083.grib2.20260620 [INFO] Detected GRIB2 format (1 records) [GRIB2 CONVERSION:] SUCCESS [INFO] Detected: EGEON Cluster  Getting Soil Moisture file for: 2026062000 Search 0 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/GL_SM.GPNR.2026062000.vfm ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026062000_1782451794  Running Pre-processes at egeon  Running PreBAM  [ OK ] 2nd call to runPre. Status: 0 [INFO] Detected: EGEON Cluster running :: runModel -das -v -np 64 -N 16 -d 8 -t 299 -l 64 -I 2026062000 -F 2026062009 -W 2026062009 -px CPT -py CPT -s sstwkl -ts 3 -r -tr 6 -i -3 -s sstwkl [INFO] Detected: EGEON Cluster  Running BAM  [ OK ] 17 minutes and 41 seconds elapsed.  > Fim do MCGA   >>> Submetendo o Sistema SMNA_v3.0.0.t12717/SMG para o dia 2026062006   > Executando o GSI  [INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >>>> Carregando arquivos prepBufrs do NCEP  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/20 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : amsuabufrNCEP atmsbufrNCEP gpsrobufrNCEP satwndbufrNCEP [ OK ] link amsuabufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/20/gdas.t06z.1bamua.tm00.bufr_d ] [ OK ] link atmsbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/20/gdas.t06z.atms.tm00.bufr_d ] [ OK ] link gpsrobufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/20/gdas.t06z.gpsro.tm00.bufr_d.nr ] [ OK ] link satwndbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/20/gdas.t06z.satwnd.tm00.bufr_d ]  Found 4 observation files from NCEP to use  >>>> Carregando arquivos prepBufrs do INPE  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/20 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : prepbufrINPE [ OK ] link prepbufrINPE @ [ /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/20/inpe.t06z.prepbufr.nr ]  Found 1 observation files from INPE to use Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026062000/GFCTCPT20260620002026062003F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026062000/GFCTCPT20260620002026062006F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026062000/GFCTCPT20260620002026062009F.fct.TQ0299L064 Copy of Public fixed files cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062000/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062006/satbias_in cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062000/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062006/satbias_pc Entrando no ciclo de BcCycles para 0  Running GSI  using /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/gsiparm.anl to setup GSI run  [ OK ] >>> mergeDiagFiles Merging diag files amsua_metop-b, outer loop 01 [ OK ] Merging diag files amsua_metop-b, outer loop 03 [ OK ] Merging diag files amsua_metop-c, outer loop 01 [ OK ] Merging diag files amsua_metop-c, outer loop 03 [ OK ] Merging diag files atms_n20, outer loop 01 [ OK ] Merging diag files atms_n20, outer loop 03 [ OK ] Merging diag files atms_n21, outer loop 01 [ OK ] Merging diag files atms_n21, outer loop 03 [ OK ] Merging diag files atms_npp, outer loop 01 [ OK ] Merging diag files atms_npp, outer loop 03 [ OK ] Merging diag files conv, outer loop 01 [ OK ] Merging diag files conv, outer loop 03 [ OK ] Merging diag files obs, outer loop setup [ OK ] >>> mergeDiagFiles do diagnostico da radiβncia /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062006/diag_amsua_metop-b_01.2026062006 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062006/diag_amsua_metop-b_03.2026062006 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062006/diag_amsua_metop-c_01.2026062006 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062006/diag_amsua_metop-c_03.2026062006 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062006/diag_atms_n20_01.2026062006 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062006/diag_atms_n20_03.2026062006 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062006/diag_atms_n21_01.2026062006 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062006/diag_atms_n21_03.2026062006 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062006/diag_atms_npp_01.2026062006 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062006/diag_atms_npp_03.2026062006 mv: cannot move '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062006/diag' to '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062006/diag': File exists cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062006/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062006/. cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062006/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062006/. 13 minutes and 25 seconds elapsed.  > Fim do GSI  Testando os dados convencionais do CPTEC se ok: 2026062006 >>>>>>> Verificar dados assimilados.... /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/./runPythonCheck.py:3: DeprecationWarning: You are importing the legacy package 'gsidiag'. This interface is deprecated and will be removed in a future major release. Please migrate to 'readDiag.open.open_diagnostic' and the DiagnosticAPI. import gsidiag as gd 2026-06-26 02:53:54,355 readDiag INFO read_conv_file completed in 1.040s ##### Lendo o arquivo do OMF: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062006/diag_conv_01.2026062006 ##### Lista das variaveis disponiveis no OMF (pfileinfo): Variable Name : ps └── kx => 120 180 181 187 Variable Name : t └── kx => 120 130 180 181 183 187 Variable Name : uv └── kx => 220 229 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 267 269 750 751 753 754 755 825 Variable Name : q └── kx => 120 180 2026-06-26 02:53:58,415 readDiag INFO read_conv_file completed in 0.882s ##### Lendo o arquivo do OMA: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062006/diag_conv_03.2026062006 ##### Lista das variaveis disponiveis no OMA (pfileinfo): Variable Name : ps └── kx => 120 180 181 187 Variable Name : t └── kx => 120 130 180 181 183 187 Variable Name : uv └── kx => 220 229 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 267 269 750 751 753 754 755 825 Variable Name : q └── kx => 120 180 ----------------- Fim do teste do Python --------------------  > Executando o MCGA  /bin/bash /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/scripts/run_model.sh 2026062006 2026062015 CPT 299 64 64 No This will run on EGEON Cluster ...[INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >> Submetendo o MCGA: 2026062006  > Resolucao (espectral) :  TQ0299L064  > Resolucao (grade) :  G00450L064   > Condicao Inicial :  2026062006  > Previsao ate :  2026062015  > Pos-proc. Ativado :  no  Running BAM Pre-process for 2026062006  SmoothTopo = .TRUE.  set PREFIX =  SMT [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026062006 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [RUN] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [NOT] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [NOT] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [NOT] SSTWeeklyNCEP [NOT] SSTWeekly [NOT] SNOWWeekly [NOT] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [NOT] TopographyGradient [INFO] Procurando an?lise NCEP para: 2026062006 [INFO] Detected: EGEON Cluster [INFO] Caminhos de busca: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain:/oper/dados/ioper/tempo/NCEP/input/2026/06/20/06 [INFO] Verificando diret?rio: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain [INFO] Arquivo encontrado: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas.T06Z.atmanl.netcdf.2026062006 ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026062006_1782453242  Running Pre-processes at egeon  Running PreBAM  [ OK ] 1st call to runPre. Status: 0  Running BAM Pre-process for 2026062006 [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026062006 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [NOT] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [RUN] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [RUN] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [RUN] SSTWeeklyNCEP [RUN] SSTWeekly [NOT] SNOWWeekly [RUN] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [RUN] TopographyGradient [INFO] Detected: EGEON Cluster [INFO] Searching SST on egeon [INFO] Target SST date: 2026062006 [INFO] Attempting SST retrieval (try 0) [FAIL: No valid SST file found for 2026062006] [INFO] Trying earlier time step: 2026062000 [INFO] Checking if SST was previously converted... [INFO] Reusing previous SST file: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas1.T00Z.sstgrd.2026062000 [INFO] Detected: EGEON Cluster  Getting Soil Moisture file for: 2026062006 Search 0 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/GL_SM.GPNR.2026062006.vfm ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026062006_1782453701  Running Pre-processes at egeon  Running PreBAM  [ OK ] 2nd call to runPre. Status: 0 [INFO] Detected: EGEON Cluster running :: runModel -das -v -np 64 -N 16 -d 8 -t 299 -l 64 -I 2026062006 -F 2026062015 -W 2026062015 -px CPT -py CPT -s sstwkl -ts 3 -r -tr 6 -i -3 -s sstwkl [INFO] Detected: EGEON Cluster  Running BAM  [ OK ] 18 minutes and 8 seconds elapsed.  > Fim do MCGA   >>> Submetendo o Sistema SMNA_v3.0.0.t12717/SMG para o dia 2026062012   > Executando o GSI  [INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >>>> Carregando arquivos prepBufrs do NCEP  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/20 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : amsuabufrNCEP atmsbufrNCEP gpsrobufrNCEP satwndbufrNCEP [ OK ] link amsuabufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/20/gdas.t12z.1bamua.tm00.bufr_d ] [ OK ] link atmsbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/20/gdas.t12z.atms.tm00.bufr_d ] [ OK ] link gpsrobufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/20/gdas.t12z.gpsro.tm00.bufr_d.nr ] [ OK ] link satwndbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/20/gdas.t12z.satwnd.tm00.bufr_d ]  Found 4 observation files from NCEP to use  >>>> Carregando arquivos prepBufrs do INPE  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/20 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : prepbufrINPE [ OK ] link prepbufrINPE @ [ /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/20/inpe.t12z.prepbufr.nr ]  Found 1 observation files from INPE to use Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026062006/GFCTCPT20260620062026062009F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026062006/GFCTCPT20260620062026062012F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026062006/GFCTCPT20260620062026062015F.fct.TQ0299L064 Copy of Public fixed files cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062006/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062012/satbias_in cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062006/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062012/satbias_pc Entrando no ciclo de BcCycles para 0  Running GSI  using /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/gsiparm.anl to setup GSI run  [ OK ] >>> mergeDiagFiles Merging diag files amsua_metop-b, outer loop 01 [ OK ] Merging diag files amsua_metop-b, outer loop 03 [ OK ] Merging diag files amsua_metop-c, outer loop 01 [ OK ] Merging diag files amsua_metop-c, outer loop 03 [ OK ] Merging diag files atms_n20, outer loop 01 [ OK ] Merging diag files atms_n20, outer loop 03 [ OK ] Merging diag files atms_n21, outer loop 01 [ OK ] Merging diag files atms_n21, outer loop 03 [ OK ] Merging diag files atms_npp, outer loop 01 [ OK ] Merging diag files atms_npp, outer loop 03 [ OK ] Merging diag files conv, outer loop 01 [ OK ] Merging diag files conv, outer loop 03 [ OK ] Merging diag files obs, outer loop setup [ OK ] >>> mergeDiagFiles do diagnostico da radiβncia /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062012/diag_amsua_metop-b_01.2026062012 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062012/diag_amsua_metop-b_03.2026062012 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062012/diag_amsua_metop-c_01.2026062012 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062012/diag_amsua_metop-c_03.2026062012 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062012/diag_atms_n20_01.2026062012 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062012/diag_atms_n20_03.2026062012 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062012/diag_atms_n21_01.2026062012 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062012/diag_atms_n21_03.2026062012 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062012/diag_atms_npp_01.2026062012 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062012/diag_atms_npp_03.2026062012 mv: cannot move '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062012/diag' to '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062012/diag': File exists cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062012/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062012/. cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062012/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062012/. 15 minutes and 2 seconds elapsed.  > Fim do GSI  Testando os dados convencionais do CPTEC se ok: 2026062012 >>>>>>> Verificar dados assimilados.... /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/./runPythonCheck.py:3: DeprecationWarning: You are importing the legacy package 'gsidiag'. This interface is deprecated and will be removed in a future major release. Please migrate to 'readDiag.open.open_diagnostic' and the DiagnosticAPI. import gsidiag as gd 2026-06-26 03:27:14,241 readDiag INFO read_conv_file completed in 1.028s ##### Lendo o arquivo do OMF: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062012/diag_conv_01.2026062012 ##### Lista das variaveis disponiveis no OMF (pfileinfo): Variable Name : ps └── kx => 120 180 181 183 187 Variable Name : t └── kx => 120 130 180 181 183 187 Variable Name : uv └── kx => 220 229 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 Variable Name : q └── kx => 120 180 2026-06-26 03:27:18,472 readDiag INFO read_conv_file completed in 0.920s ##### Lendo o arquivo do OMA: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062012/diag_conv_03.2026062012 ##### Lista das variaveis disponiveis no OMA (pfileinfo): Variable Name : ps └── kx => 120 180 181 183 187 Variable Name : t └── kx => 120 130 180 181 183 187 Variable Name : uv └── kx => 220 229 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 Variable Name : q └── kx => 120 180 ----------------- Fim do teste do Python --------------------  > Executando o MCGA  /bin/bash /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/scripts/run_model.sh 2026062012 2026062021 CPT 299 64 64 No This will run on EGEON Cluster ...[INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >> Submetendo o MCGA: 2026062012  > Resolucao (espectral) :  TQ0299L064  > Resolucao (grade) :  G00450L064   > Condicao Inicial :  2026062012  > Previsao ate :  2026062021  > Pos-proc. Ativado :  no  Running BAM Pre-process for 2026062012  SmoothTopo = .TRUE.  set PREFIX =  SMT [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026062012 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [RUN] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [NOT] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [NOT] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [NOT] SSTWeeklyNCEP [NOT] SSTWeekly [NOT] SNOWWeekly [NOT] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [NOT] TopographyGradient [INFO] Procurando an?lise NCEP para: 2026062012 [INFO] Detected: EGEON Cluster [INFO] Caminhos de busca: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain:/oper/dados/ioper/tempo/NCEP/input/2026/06/20/12 [INFO] Verificando diret?rio: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain [INFO] Arquivo encontrado: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas.T12Z.atmanl.netcdf.2026062012 ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026062012_1782455242  Running Pre-processes at egeon  Running PreBAM  [ OK ] 1st call to runPre. Status: 0  Running BAM Pre-process for 2026062012 [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026062012 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [NOT] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [RUN] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [RUN] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [RUN] SSTWeeklyNCEP [RUN] SSTWeekly [NOT] SNOWWeekly [RUN] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [RUN] TopographyGradient [INFO] Detected: EGEON Cluster [INFO] Searching SST on egeon [INFO] Target SST date: 2026062012 [INFO] Attempting SST retrieval (try 0) [FAIL: No valid SST file found for 2026062012] [INFO] Trying earlier time step: 2026062006 [INFO] Checking if SST was previously converted... [INFO] Reusing previous SST file: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas1.T06Z.sstgrd.2026062006 [INFO] Detected: EGEON Cluster  Getting Soil Moisture file for: 2026062012 Search 0 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/GL_SM.GPNR.2026062012.vfm ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026062012_1782455670  Running Pre-processes at egeon  Running PreBAM  [ OK ] 2nd call to runPre. Status: 0 [INFO] Detected: EGEON Cluster running :: runModel -das -v -np 64 -N 16 -d 8 -t 299 -l 64 -I 2026062012 -F 2026062021 -W 2026062021 -px CPT -py CPT -s sstwkl -ts 3 -r -tr 6 -i -3 -s sstwkl [INFO] Detected: EGEON Cluster  Running BAM  [ OK ] 17 minutes and 37 seconds elapsed.  > Fim do MCGA   >>> Submetendo o Sistema SMNA_v3.0.0.t12717/SMG para o dia 2026062018   > Executando o GSI  [INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >>>> Carregando arquivos prepBufrs do NCEP  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/20 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : amsuabufrNCEP atmsbufrNCEP gpsrobufrNCEP satwndbufrNCEP [ OK ] link amsuabufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/20/gdas.t18z.1bamua.tm00.bufr_d ] [ OK ] link atmsbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/20/gdas.t18z.atms.tm00.bufr_d ] [ OK ] link gpsrobufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/20/gdas.t18z.gpsro.tm00.bufr_d.nr ] [ OK ] link satwndbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/20/gdas.t18z.satwnd.tm00.bufr_d ]  Found 4 observation files from NCEP to use  >>>> Carregando arquivos prepBufrs do INPE  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/20 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : prepbufrINPE [ OK ] link prepbufrINPE @ [ /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/20/inpe.t18z.prepbufr.nr ]  Found 1 observation files from INPE to use Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026062012/GFCTCPT20260620122026062015F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026062012/GFCTCPT20260620122026062018F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026062012/GFCTCPT20260620122026062021F.fct.TQ0299L064 Copy of Public fixed files cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062012/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062018/satbias_in cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062012/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062018/satbias_pc Entrando no ciclo de BcCycles para 0  Running GSI  using /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/gsiparm.anl to setup GSI run  [ OK ] >>> mergeDiagFiles Merging diag files amsua_metop-b, outer loop 01 [ OK ] Merging diag files amsua_metop-b, outer loop 03 [ OK ] Merging diag files amsua_metop-c, outer loop 01 [ OK ] Merging diag files amsua_metop-c, outer loop 03 [ OK ] Merging diag files atms_n20, outer loop 01 [ OK ] Merging diag files atms_n20, outer loop 03 [ OK ] Merging diag files atms_n21, outer loop 01 [ OK ] Merging diag files atms_n21, outer loop 03 [ OK ] Merging diag files atms_npp, outer loop 01 [ OK ] Merging diag files atms_npp, outer loop 03 [ OK ] Merging diag files conv, outer loop 01 [ OK ] Merging diag files conv, outer loop 03 [ OK ] Merging diag files obs, outer loop setup [ OK ] >>> mergeDiagFiles do diagnostico da radiβncia /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062018/diag_amsua_metop-b_01.2026062018 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062018/diag_amsua_metop-b_03.2026062018 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062018/diag_amsua_metop-c_01.2026062018 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062018/diag_amsua_metop-c_03.2026062018 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062018/diag_atms_n20_01.2026062018 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062018/diag_atms_n20_03.2026062018 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062018/diag_atms_n21_01.2026062018 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062018/diag_atms_n21_03.2026062018 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062018/diag_atms_npp_01.2026062018 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062018/diag_atms_npp_03.2026062018 mv: cannot move '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062018/diag' to '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062018/diag': File exists cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062018/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062018/. cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062018/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062018/. 15 minutes and 2 seconds elapsed.  > Fim do GSI  Testando os dados convencionais do CPTEC se ok: 2026062018 >>>>>>> Verificar dados assimilados.... /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/./runPythonCheck.py:3: DeprecationWarning: You are importing the legacy package 'gsidiag'. This interface is deprecated and will be removed in a future major release. Please migrate to 'readDiag.open.open_diagnostic' and the DiagnosticAPI. import gsidiag as gd 2026-06-26 04:00:03,683 readDiag INFO read_conv_file completed in 0.846s ##### Lendo o arquivo do OMF: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062018/diag_conv_01.2026062018 ##### Lista das variaveis disponiveis no OMF (pfileinfo): Variable Name : uv └── kx => 240 242 243 244 245 246 247 250 252 253 254 255 260 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 2026-06-26 04:00:07,098 readDiag INFO read_conv_file completed in 0.786s ##### Lendo o arquivo do OMA: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062018/diag_conv_03.2026062018 ##### Lista das variaveis disponiveis no OMA (pfileinfo): Variable Name : uv └── kx => 240 242 243 244 245 246 247 250 252 253 254 255 260 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 ----------------- Fim do teste do Python --------------------  > Executando o MCGA  /bin/bash /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/scripts/run_model.sh 2026062018 2026062103 CPT 299 64 64 No This will run on EGEON Cluster ...[INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >> Submetendo o MCGA: 2026062018  > Resolucao (espectral) :  TQ0299L064  > Resolucao (grade) :  G00450L064   > Condicao Inicial :  2026062018  > Previsao ate :  2026062103  > Pos-proc. Ativado :  no  Running BAM Pre-process for 2026062018  SmoothTopo = .TRUE.  set PREFIX =  SMT [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026062018 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [RUN] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [NOT] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [NOT] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [NOT] SSTWeeklyNCEP [NOT] SSTWeekly [NOT] SNOWWeekly [NOT] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [NOT] TopographyGradient [INFO] Procurando an?lise NCEP para: 2026062018 [INFO] Detected: EGEON Cluster [INFO] Caminhos de busca: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain:/oper/dados/ioper/tempo/NCEP/input/2026/06/20/18 [INFO] Verificando diret?rio: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain [INFO] Arquivo encontrado: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas.T18Z.atmanl.netcdf.2026062018 ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026062018_1782457212  Running Pre-processes at egeon  Running PreBAM  [ OK ] 1st call to runPre. Status: 0  Running BAM Pre-process for 2026062018 [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026062018 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [NOT] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [RUN] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [RUN] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [RUN] SSTWeeklyNCEP [RUN] SSTWeekly [NOT] SNOWWeekly [RUN] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [RUN] TopographyGradient [INFO] Detected: EGEON Cluster [INFO] Searching SST on egeon [INFO] Target SST date: 2026062018 [INFO] Attempting SST retrieval (try 0) [FAIL: No valid SST file found for 2026062018] [INFO] Trying earlier time step: 2026062012 [INFO] Checking if SST was previously converted... [INFO] Reusing previous SST file: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas1.T12Z.sstgrd.2026062012 [INFO] Detected: EGEON Cluster  Getting Soil Moisture file for: 2026062018 Search 0 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/GL_SM.GPNR.2026062018.vfm ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026062018_1782457639  Running Pre-processes at egeon  Running PreBAM  [ OK ] 2nd call to runPre. Status: 0 [INFO] Detected: EGEON Cluster running :: runModel -das -v -np 64 -N 16 -d 8 -t 299 -l 64 -I 2026062018 -F 2026062103 -W 2026062103 -px CPT -py CPT -s sstwkl -ts 3 -r -tr 6 -i -3 -s sstwkl [INFO] Detected: EGEON Cluster  Running BAM  [ OK ] 18 minutes and 11 seconds elapsed.  > Fim do MCGA   >>> Submetendo o Sistema SMNA_v3.0.0.t12717/SMG para o dia 2026062100   > Executando o GSI  [INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >>>> Carregando arquivos prepBufrs do NCEP  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/21 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : amsuabufrNCEP atmsbufrNCEP gpsrobufrNCEP satwndbufrNCEP [ OK ] link amsuabufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/21/gdas.t00z.1bamua.tm00.bufr_d ] [ OK ] link atmsbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/21/gdas.t00z.atms.tm00.bufr_d ] [ OK ] link gpsrobufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/21/gdas.t00z.gpsro.tm00.bufr_d.nr ] [ OK ] link satwndbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/21/gdas.t00z.satwnd.tm00.bufr_d ]  Found 4 observation files from NCEP to use  >>>> Carregando arquivos prepBufrs do INPE  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/21 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : prepbufrINPE [ OK ] link prepbufrINPE @ [ /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/21/inpe.t00z.prepbufr.nr ]  Found 1 observation files from INPE to use Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026062018/GFCTCPT20260620182026062021F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026062018/GFCTCPT20260620182026062100F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026062018/GFCTCPT20260620182026062103F.fct.TQ0299L064 Copy of Public fixed files cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062018/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062100/satbias_in cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062018/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062100/satbias_pc Entrando no ciclo de BcCycles para 0  Running GSI  using /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/gsiparm.anl to setup GSI run  [ OK ] >>> mergeDiagFiles Merging diag files amsua_metop-b, outer loop 01 [ OK ] Merging diag files amsua_metop-b, outer loop 03 [ OK ] Merging diag files amsua_metop-c, outer loop 01 [ OK ] Merging diag files amsua_metop-c, outer loop 03 [ OK ] Merging diag files atms_n20, outer loop 01 [ OK ] Merging diag files atms_n20, outer loop 03 [ OK ] Merging diag files atms_n21, outer loop 01 [ OK ] Merging diag files atms_n21, outer loop 03 [ OK ] Merging diag files atms_npp, outer loop 01 [ OK ] Merging diag files atms_npp, outer loop 03 [ OK ] Merging diag files conv, outer loop 01 [ OK ] Merging diag files conv, outer loop 03 [ OK ] Merging diag files obs, outer loop setup [ OK ] >>> mergeDiagFiles do diagnostico da radiβncia /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062100/diag_amsua_metop-b_01.2026062100 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062100/diag_amsua_metop-b_03.2026062100 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062100/diag_amsua_metop-c_01.2026062100 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062100/diag_amsua_metop-c_03.2026062100 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062100/diag_atms_n20_01.2026062100 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062100/diag_atms_n20_03.2026062100 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062100/diag_atms_n21_01.2026062100 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062100/diag_atms_n21_03.2026062100 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062100/diag_atms_npp_01.2026062100 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062100/diag_atms_npp_03.2026062100 mv: cannot move '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062100/diag' to '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062100/diag': File exists cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062100/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062100/. cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062100/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062100/. 15 minutes and 31 seconds elapsed.  > Fim do GSI  Testando os dados convencionais do CPTEC se ok: 2026062100 >>>>>>> Verificar dados assimilados.... /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/./runPythonCheck.py:3: DeprecationWarning: You are importing the legacy package 'gsidiag'. This interface is deprecated and will be removed in a future major release. Please migrate to 'readDiag.open.open_diagnostic' and the DiagnosticAPI. import gsidiag as gd 2026-06-26 04:33:54,404 readDiag INFO read_conv_file completed in 1.040s ##### Lendo o arquivo do OMF: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062100/diag_conv_01.2026062100 ##### Lista das variaveis disponiveis no OMF (pfileinfo): Variable Name : ps └── kx => 120 180 181 183 187 Variable Name : t └── kx => 120 130 180 181 183 187 Variable Name : uv └── kx => 220 229 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 267 269 750 751 753 754 755 Variable Name : q └── kx => 120 180 2026-06-26 04:33:58,652 readDiag INFO read_conv_file completed in 0.887s ##### Lendo o arquivo do OMA: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062100/diag_conv_03.2026062100 ##### Lista das variaveis disponiveis no OMA (pfileinfo): Variable Name : ps └── kx => 120 180 181 183 187 Variable Name : t └── kx => 120 130 180 181 183 187 Variable Name : uv └── kx => 220 229 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 267 269 750 751 753 754 755 Variable Name : q └── kx => 120 180 ----------------- Fim do teste do Python --------------------  > Executando o MCGA  /bin/bash /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/scripts/run_model.sh 2026062100 2026062109 CPT 299 64 64 No This will run on EGEON Cluster ...[INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >> Submetendo o MCGA: 2026062100  > Resolucao (espectral) :  TQ0299L064  > Resolucao (grade) :  G00450L064   > Condicao Inicial :  2026062100  > Previsao ate :  2026062109  > Pos-proc. Ativado :  no  Running BAM Pre-process for 2026062100  SmoothTopo = .TRUE.  set PREFIX =  SMT [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026062100 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [RUN] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [NOT] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [NOT] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [NOT] SSTWeeklyNCEP [NOT] SSTWeekly [NOT] SNOWWeekly [NOT] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [NOT] TopographyGradient [INFO] Procurando an?lise NCEP para: 2026062100 [INFO] Detected: EGEON Cluster [INFO] Caminhos de busca: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain:/oper/dados/ioper/tempo/NCEP/input/2026/06/21/00 [INFO] Verificando diret?rio: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain [INFO] Arquivo encontrado: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas.T00Z.atmanl.netcdf.2026062100 ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026062100_1782459243  Running Pre-processes at egeon  Running PreBAM  [ OK ] 1st call to runPre. Status: 0  Running BAM Pre-process for 2026062100 [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026062100 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [NOT] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [RUN] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [RUN] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [RUN] SSTWeeklyNCEP [RUN] SSTWeekly [NOT] SNOWWeekly [RUN] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [RUN] TopographyGradient [INFO] Detected: EGEON Cluster [INFO] Searching SST on egeon [INFO] Target SST date: 2026062100 [INFO] Attempting SST retrieval (try 0) [INFO] Found file: /oper/dados/ioper/tempo/NCEP/input/2026/06/21/00/rtgssthr_grb_0.083.grib2.20260621 [INFO] Detected GRIB2 format (1 records) [GRIB2 CONVERSION:] SUCCESS [INFO] Detected: EGEON Cluster  Getting Soil Moisture file for: 2026062100 Search 0 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/GL_SM.GPNR.2026062100.vfm ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026062100_1782459669  Running Pre-processes at egeon  Running PreBAM  [ OK ] 2nd call to runPre. Status: 0 [INFO] Detected: EGEON Cluster running :: runModel -das -v -np 64 -N 16 -d 8 -t 299 -l 64 -I 2026062100 -F 2026062109 -W 2026062109 -px CPT -py CPT -s sstwkl -ts 3 -r -tr 6 -i -3 -s sstwkl [INFO] Detected: EGEON Cluster  Running BAM  [ OK ] 18 minutes and 12 seconds elapsed.  > Fim do MCGA   >>> Submetendo o Sistema SMNA_v3.0.0.t12717/SMG para o dia 2026062106   > Executando o GSI  [INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >>>> Carregando arquivos prepBufrs do NCEP  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/21 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : amsuabufrNCEP atmsbufrNCEP gpsrobufrNCEP satwndbufrNCEP [ OK ] link amsuabufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/21/gdas.t06z.1bamua.tm00.bufr_d ] [ OK ] link atmsbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/21/gdas.t06z.atms.tm00.bufr_d ] [ OK ] link gpsrobufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/21/gdas.t06z.gpsro.tm00.bufr_d.nr ] [ OK ] link satwndbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/21/gdas.t06z.satwnd.tm00.bufr_d ]  Found 4 observation files from NCEP to use  >>>> Carregando arquivos prepBufrs do INPE  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/21 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : prepbufrINPE [ OK ] link prepbufrINPE @ [ /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/21/inpe.t06z.prepbufr.nr ]  Found 1 observation files from INPE to use Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026062100/GFCTCPT20260621002026062103F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026062100/GFCTCPT20260621002026062106F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026062100/GFCTCPT20260621002026062109F.fct.TQ0299L064 Copy of Public fixed files cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062100/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062106/satbias_in cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062100/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062106/satbias_pc Entrando no ciclo de BcCycles para 0  Running GSI  using /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/gsiparm.anl to setup GSI run  [ OK ] >>> mergeDiagFiles Merging diag files amsua_metop-b, outer loop 01 [ OK ] Merging diag files amsua_metop-b, outer loop 03 [ OK ] Merging diag files amsua_metop-c, outer loop 01 [ OK ] Merging diag files amsua_metop-c, outer loop 03 [ OK ] Merging diag files atms_n20, outer loop 01 [ OK ] Merging diag files atms_n20, outer loop 03 [ OK ] Merging diag files atms_n21, outer loop 01 [ OK ] Merging diag files atms_n21, outer loop 03 [ OK ] Merging diag files atms_npp, outer loop 01 [ OK ] Merging diag files atms_npp, outer loop 03 [ OK ] Merging diag files conv, outer loop 01 [ OK ] Merging diag files conv, outer loop 03 [ OK ] Merging diag files obs, outer loop setup [ OK ] >>> mergeDiagFiles do diagnostico da radiβncia /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062106/diag_amsua_metop-b_01.2026062106 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062106/diag_amsua_metop-b_03.2026062106 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062106/diag_amsua_metop-c_01.2026062106 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062106/diag_amsua_metop-c_03.2026062106 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062106/diag_atms_n20_01.2026062106 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062106/diag_atms_n20_03.2026062106 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062106/diag_atms_n21_01.2026062106 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062106/diag_atms_n21_03.2026062106 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062106/diag_atms_npp_01.2026062106 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062106/diag_atms_npp_03.2026062106 mv: cannot move '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062106/diag' to '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062106/diag': File exists cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062106/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062106/. cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062106/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062106/. 13 minutes and 55 seconds elapsed.  > Fim do GSI  Testando os dados convencionais do CPTEC se ok: 2026062106 >>>>>>> Verificar dados assimilados.... /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/./runPythonCheck.py:3: DeprecationWarning: You are importing the legacy package 'gsidiag'. This interface is deprecated and will be removed in a future major release. Please migrate to 'readDiag.open.open_diagnostic' and the DiagnosticAPI. import gsidiag as gd 2026-06-26 05:06:12,339 readDiag INFO read_conv_file completed in 1.334s ##### Lendo o arquivo do OMF: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062106/diag_conv_01.2026062106 ##### Lista das variaveis disponiveis no OMF (pfileinfo): Variable Name : ps └── kx => 120 180 181 187 Variable Name : t └── kx => 120 130 180 181 183 187 Variable Name : uv └── kx => 220 229 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 Variable Name : q └── kx => 120 180 2026-06-26 05:06:17,539 readDiag INFO read_conv_file completed in 1.178s ##### Lendo o arquivo do OMA: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062106/diag_conv_03.2026062106 ##### Lista das variaveis disponiveis no OMA (pfileinfo): Variable Name : ps └── kx => 120 180 181 187 Variable Name : t └── kx => 120 130 180 181 183 187 Variable Name : uv └── kx => 220 229 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 Variable Name : q └── kx => 120 180 ----------------- Fim do teste do Python --------------------  > Executando o MCGA  /bin/bash /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/scripts/run_model.sh 2026062106 2026062115 CPT 299 64 64 No This will run on EGEON Cluster ...[INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >> Submetendo o MCGA: 2026062106  > Resolucao (espectral) :  TQ0299L064  > Resolucao (grade) :  G00450L064   > Condicao Inicial :  2026062106  > Previsao ate :  2026062115  > Pos-proc. Ativado :  no  Running BAM Pre-process for 2026062106  SmoothTopo = .TRUE.  set PREFIX =  SMT [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026062106 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [RUN] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [NOT] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [NOT] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [NOT] SSTWeeklyNCEP [NOT] SSTWeekly [NOT] SNOWWeekly [NOT] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [NOT] TopographyGradient [INFO] Procurando an?lise NCEP para: 2026062106 [INFO] Detected: EGEON Cluster [INFO] Caminhos de busca: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain:/oper/dados/ioper/tempo/NCEP/input/2026/06/21/06 [INFO] Verificando diret?rio: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain [INFO] Arquivo encontrado: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas.T06Z.atmanl.netcdf.2026062106 ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026062106_1782461183  Running Pre-processes at egeon  Running PreBAM  [ OK ] 1st call to runPre. Status: 0  Running BAM Pre-process for 2026062106 [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026062106 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [NOT] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [RUN] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [RUN] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [RUN] SSTWeeklyNCEP [RUN] SSTWeekly [NOT] SNOWWeekly [RUN] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [RUN] TopographyGradient [INFO] Detected: EGEON Cluster [INFO] Searching SST on egeon [INFO] Target SST date: 2026062106 [INFO] Attempting SST retrieval (try 0) [FAIL: No valid SST file found for 2026062106] [INFO] Trying earlier time step: 2026062100 [INFO] Checking if SST was previously converted... [INFO] Reusing previous SST file: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas1.T00Z.sstgrd.2026062100 [INFO] Detected: EGEON Cluster  Getting Soil Moisture file for: 2026062106 Search 0 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/GL_SM.GPNR.2026062106.vfm ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026062106_1782461609  Running Pre-processes at egeon  Running PreBAM  [ OK ] 2nd call to runPre. Status: 0 [INFO] Detected: EGEON Cluster running :: runModel -das -v -np 64 -N 16 -d 8 -t 299 -l 64 -I 2026062106 -F 2026062115 -W 2026062115 -px CPT -py CPT -s sstwkl -ts 3 -r -tr 6 -i -3 -s sstwkl [INFO] Detected: EGEON Cluster  Running BAM  [ OK ] 18 minutes and 8 seconds elapsed.  > Fim do MCGA   >>> Submetendo o Sistema SMNA_v3.0.0.t12717/SMG para o dia 2026062112   > Executando o GSI  [INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >>>> Carregando arquivos prepBufrs do NCEP  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/21 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : amsuabufrNCEP atmsbufrNCEP gpsrobufrNCEP satwndbufrNCEP [ OK ] link amsuabufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/21/gdas.t12z.1bamua.tm00.bufr_d ] [ OK ] link atmsbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/21/gdas.t12z.atms.tm00.bufr_d ] [ OK ] link gpsrobufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/21/gdas.t12z.gpsro.tm00.bufr_d.nr ] [ OK ] link satwndbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/21/gdas.t12z.satwnd.tm00.bufr_d ]  Found 4 observation files from NCEP to use  >>>> Carregando arquivos prepBufrs do INPE  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/21 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : prepbufrINPE [ OK ] link prepbufrINPE @ [ /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/21/inpe.t12z.prepbufr.nr ]  Found 1 observation files from INPE to use Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026062106/GFCTCPT20260621062026062109F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026062106/GFCTCPT20260621062026062112F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026062106/GFCTCPT20260621062026062115F.fct.TQ0299L064 Copy of Public fixed files cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062106/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062112/satbias_in cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062106/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062112/satbias_pc Entrando no ciclo de BcCycles para 0  Running GSI  using /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/gsiparm.anl to setup GSI run  [ OK ] >>> mergeDiagFiles Merging diag files amsua_metop-b, outer loop 01 [ OK ] Merging diag files amsua_metop-b, outer loop 03 [ OK ] Merging diag files amsua_metop-c, outer loop 01 [ OK ] Merging diag files amsua_metop-c, outer loop 03 [ OK ] Merging diag files atms_n20, outer loop 01 [ OK ] Merging diag files atms_n20, outer loop 03 [ OK ] Merging diag files atms_n21, outer loop 01 [ OK ] Merging diag files atms_n21, outer loop 03 [ OK ] Merging diag files atms_npp, outer loop 01 [ OK ] Merging diag files atms_npp, outer loop 03 [ OK ] Merging diag files conv, outer loop 01 [ OK ] Merging diag files conv, outer loop 03 [ OK ] Merging diag files obs, outer loop setup [ OK ] >>> mergeDiagFiles do diagnostico da radiβncia /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062112/diag_amsua_metop-b_01.2026062112 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062112/diag_amsua_metop-b_03.2026062112 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062112/diag_amsua_metop-c_01.2026062112 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062112/diag_amsua_metop-c_03.2026062112 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062112/diag_atms_n20_01.2026062112 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062112/diag_atms_n20_03.2026062112 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062112/diag_atms_n21_01.2026062112 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062112/diag_atms_n21_03.2026062112 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062112/diag_atms_npp_01.2026062112 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062112/diag_atms_npp_03.2026062112 mv: cannot move '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062112/diag' to '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062112/diag': File exists cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062112/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062112/. cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062112/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062112/. 14 minutes and 59 seconds elapsed.  > Fim do GSI  Testando os dados convencionais do CPTEC se ok: 2026062112 >>>>>>> Verificar dados assimilados.... /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/./runPythonCheck.py:3: DeprecationWarning: You are importing the legacy package 'gsidiag'. This interface is deprecated and will be removed in a future major release. Please migrate to 'readDiag.open.open_diagnostic' and the DiagnosticAPI. import gsidiag as gd 2026-06-26 05:39:33,271 readDiag INFO read_conv_file completed in 1.393s ##### Lendo o arquivo do OMF: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062112/diag_conv_01.2026062112 ##### Lista das variaveis disponiveis no OMF (pfileinfo): Variable Name : ps └── kx => 120 180 181 183 187 Variable Name : t └── kx => 120 130 180 181 183 187 Variable Name : uv └── kx => 220 229 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 Variable Name : q └── kx => 120 180 2026-06-26 05:39:38,714 readDiag INFO read_conv_file completed in 1.229s ##### Lendo o arquivo do OMA: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062112/diag_conv_03.2026062112 ##### Lista das variaveis disponiveis no OMA (pfileinfo): Variable Name : ps └── kx => 120 180 181 183 187 Variable Name : t └── kx => 120 130 180 181 183 187 Variable Name : uv └── kx => 220 229 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 Variable Name : q └── kx => 120 180 ----------------- Fim do teste do Python --------------------  > Executando o MCGA  /bin/bash /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/scripts/run_model.sh 2026062112 2026062121 CPT 299 64 64 No This will run on EGEON Cluster ...[INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >> Submetendo o MCGA: 2026062112  > Resolucao (espectral) :  TQ0299L064  > Resolucao (grade) :  G00450L064   > Condicao Inicial :  2026062112  > Previsao ate :  2026062121  > Pos-proc. Ativado :  no  Running BAM Pre-process for 2026062112  SmoothTopo = .TRUE.  set PREFIX =  SMT [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026062112 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [RUN] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [NOT] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [NOT] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [NOT] SSTWeeklyNCEP [NOT] SSTWeekly [NOT] SNOWWeekly [NOT] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [NOT] TopographyGradient [INFO] Procurando an?lise NCEP para: 2026062112 [INFO] Detected: EGEON Cluster [INFO] Caminhos de busca: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain:/oper/dados/ioper/tempo/NCEP/input/2026/06/21/12 [INFO] Verificando diret?rio: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain [INFO] Arquivo encontrado: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas.T12Z.atmanl.netcdf.2026062112 ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026062112_1782463184  Running Pre-processes at egeon  Running PreBAM  [ OK ] 1st call to runPre. Status: 0  Running BAM Pre-process for 2026062112 [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026062112 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [NOT] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [RUN] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [RUN] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [RUN] SSTWeeklyNCEP [RUN] SSTWeekly [NOT] SNOWWeekly [RUN] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [RUN] TopographyGradient [INFO] Detected: EGEON Cluster [INFO] Searching SST on egeon [INFO] Target SST date: 2026062112 [INFO] Attempting SST retrieval (try 0) [FAIL: No valid SST file found for 2026062112] [INFO] Trying earlier time step: 2026062106 [INFO] Checking if SST was previously converted... [INFO] Reusing previous SST file: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas1.T06Z.sstgrd.2026062106 [INFO] Detected: EGEON Cluster  Getting Soil Moisture file for: 2026062112 Search 0 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/GL_SM.GPNR.2026062112.vfm ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026062112_1782463643  Running Pre-processes at egeon  Running PreBAM  [ OK ] 2nd call to runPre. Status: 0 [INFO] Detected: EGEON Cluster running :: runModel -das -v -np 64 -N 16 -d 8 -t 299 -l 64 -I 2026062112 -F 2026062121 -W 2026062121 -px CPT -py CPT -s sstwkl -ts 3 -r -tr 6 -i -3 -s sstwkl [INFO] Detected: EGEON Cluster  Running BAM  [ OK ] 18 minutes and 41 seconds elapsed.  > Fim do MCGA   >>> Submetendo o Sistema SMNA_v3.0.0.t12717/SMG para o dia 2026062118   > Executando o GSI  [INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >>>> Carregando arquivos prepBufrs do NCEP  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/21 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : amsuabufrNCEP atmsbufrNCEP gpsrobufrNCEP satwndbufrNCEP [ OK ] link amsuabufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/21/gdas.t18z.1bamua.tm00.bufr_d ] [ OK ] link atmsbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/21/gdas.t18z.atms.tm00.bufr_d ] [ OK ] link gpsrobufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/21/gdas.t18z.gpsro.tm00.bufr_d.nr ] [ OK ] link satwndbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/21/gdas.t18z.satwnd.tm00.bufr_d ]  Found 4 observation files from NCEP to use  >>>> Carregando arquivos prepBufrs do INPE  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/21 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : prepbufrINPE [ OK ] link prepbufrINPE @ [ /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/21/inpe.t18z.prepbufr.nr ]  Found 1 observation files from INPE to use Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026062112/GFCTCPT20260621122026062115F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026062112/GFCTCPT20260621122026062118F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026062112/GFCTCPT20260621122026062121F.fct.TQ0299L064 Copy of Public fixed files cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062112/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062118/satbias_in cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062112/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062118/satbias_pc Entrando no ciclo de BcCycles para 0  Running GSI  using /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/gsiparm.anl to setup GSI run  [ OK ] >>> mergeDiagFiles Merging diag files amsua_metop-b, outer loop 01 [ OK ] Merging diag files amsua_metop-b, outer loop 03 [ OK ] Merging diag files amsua_metop-c, outer loop 01 [ OK ] Merging diag files amsua_metop-c, outer loop 03 [ OK ] Merging diag files atms_n20, outer loop 01 [ OK ] Merging diag files atms_n20, outer loop 03 [ OK ] Merging diag files atms_n21, outer loop 01 [ OK ] Merging diag files atms_n21, outer loop 03 [ OK ] Merging diag files atms_npp, outer loop 01 [ OK ] Merging diag files atms_npp, outer loop 03 [ OK ] Merging diag files conv, outer loop 01 [ OK ] Merging diag files conv, outer loop 03 [ OK ] Merging diag files obs, outer loop setup [ OK ] >>> mergeDiagFiles do diagnostico da radiβncia /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062118/diag_amsua_metop-b_01.2026062118 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062118/diag_amsua_metop-b_03.2026062118 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062118/diag_amsua_metop-c_01.2026062118 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062118/diag_amsua_metop-c_03.2026062118 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062118/diag_atms_n20_01.2026062118 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062118/diag_atms_n20_03.2026062118 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062118/diag_atms_n21_01.2026062118 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062118/diag_atms_n21_03.2026062118 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062118/diag_atms_npp_01.2026062118 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062118/diag_atms_npp_03.2026062118 mv: cannot move '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062118/diag' to '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062118/diag': File exists cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062118/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062118/. cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062118/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062118/. 14 minutes and 59 seconds elapsed.  > Fim do GSI  Testando os dados convencionais do CPTEC se ok: 2026062118 >>>>>>> Verificar dados assimilados.... /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/./runPythonCheck.py:3: DeprecationWarning: You are importing the legacy package 'gsidiag'. This interface is deprecated and will be removed in a future major release. Please migrate to 'readDiag.open.open_diagnostic' and the DiagnosticAPI. import gsidiag as gd 2026-06-26 06:13:25,278 readDiag INFO read_conv_file completed in 1.039s ##### Lendo o arquivo do OMF: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062118/diag_conv_01.2026062118 ##### Lista das variaveis disponiveis no OMF (pfileinfo): Variable Name : uv └── kx => 240 242 243 244 245 246 247 250 252 253 254 255 260 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 2026-06-26 06:13:29,413 readDiag INFO read_conv_file completed in 0.954s ##### Lendo o arquivo do OMA: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062118/diag_conv_03.2026062118 ##### Lista das variaveis disponiveis no OMA (pfileinfo): Variable Name : uv └── kx => 240 242 243 244 245 246 247 250 252 253 254 255 260 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 ----------------- Fim do teste do Python --------------------  > Executando o MCGA  /bin/bash /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/scripts/run_model.sh 2026062118 2026062203 CPT 299 64 64 No This will run on EGEON Cluster ...[INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >> Submetendo o MCGA: 2026062118  > Resolucao (espectral) :  TQ0299L064  > Resolucao (grade) :  G00450L064   > Condicao Inicial :  2026062118  > Previsao ate :  2026062203  > Pos-proc. Ativado :  no  Running BAM Pre-process for 2026062118  SmoothTopo = .TRUE.  set PREFIX =  SMT [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026062118 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [RUN] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [NOT] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [NOT] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [NOT] SSTWeeklyNCEP [NOT] SSTWeekly [NOT] SNOWWeekly [NOT] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [NOT] TopographyGradient [INFO] Procurando an?lise NCEP para: 2026062118 [INFO] Detected: EGEON Cluster [INFO] Caminhos de busca: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain:/oper/dados/ioper/tempo/NCEP/input/2026/06/21/18 [INFO] Verificando diret?rio: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain [INFO] Arquivo encontrado: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas.T18Z.atmanl.netcdf.2026062118 ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026062118_1782465214  Running Pre-processes at egeon  Running PreBAM  [ OK ] 1st call to runPre. Status: 0  Running BAM Pre-process for 2026062118 [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026062118 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [NOT] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [RUN] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [RUN] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [RUN] SSTWeeklyNCEP [RUN] SSTWeekly [NOT] SNOWWeekly [RUN] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [RUN] TopographyGradient [INFO] Detected: EGEON Cluster [INFO] Searching SST on egeon [INFO] Target SST date: 2026062118 [INFO] Attempting SST retrieval (try 0) [FAIL: No valid SST file found for 2026062118] [INFO] Trying earlier time step: 2026062112 [INFO] Checking if SST was previously converted... [INFO] Reusing previous SST file: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas1.T12Z.sstgrd.2026062112 [INFO] Detected: EGEON Cluster  Getting Soil Moisture file for: 2026062118 Search 0 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/GL_SM.GPNR.2026062118.vfm ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026062118_1782465672  Running Pre-processes at egeon  Running PreBAM  [ OK ] 2nd call to runPre. Status: 0 [INFO] Detected: EGEON Cluster running :: runModel -das -v -np 64 -N 16 -d 8 -t 299 -l 64 -I 2026062118 -F 2026062203 -W 2026062203 -px CPT -py CPT -s sstwkl -ts 3 -r -tr 6 -i -3 -s sstwkl [INFO] Detected: EGEON Cluster  Running BAM  [ OK ] 18 minutes and 40 seconds elapsed.  > Fim do MCGA   >>> Submetendo o Sistema SMNA_v3.0.0.t12717/SMG para o dia 2026062200   > Executando o GSI  [INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >>>> Carregando arquivos prepBufrs do NCEP  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/22 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : amsuabufrNCEP atmsbufrNCEP gpsrobufrNCEP satwndbufrNCEP [ OK ] link amsuabufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/22/gdas.t00z.1bamua.tm00.bufr_d ] [ OK ] link atmsbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/22/gdas.t00z.atms.tm00.bufr_d ] [ OK ] link gpsrobufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/22/gdas.t00z.gpsro.tm00.bufr_d.nr ] [ OK ] link satwndbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/22/gdas.t00z.satwnd.tm00.bufr_d ]  Found 4 observation files from NCEP to use  >>>> Carregando arquivos prepBufrs do INPE  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/22 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : prepbufrINPE [ OK ] link prepbufrINPE @ [ /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/22/inpe.t00z.prepbufr.nr ]  Found 1 observation files from INPE to use Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026062118/GFCTCPT20260621182026062121F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026062118/GFCTCPT20260621182026062200F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026062118/GFCTCPT20260621182026062203F.fct.TQ0299L064 Copy of Public fixed files cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062118/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062200/satbias_in cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062118/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062200/satbias_pc Entrando no ciclo de BcCycles para 0  Running GSI  using /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/gsiparm.anl to setup GSI run  [ OK ] >>> mergeDiagFiles Merging diag files amsua_metop-b, outer loop 01 [ OK ] Merging diag files amsua_metop-b, outer loop 03 [ OK ] Merging diag files amsua_metop-c, outer loop 01 [ OK ] Merging diag files amsua_metop-c, outer loop 03 [ OK ] Merging diag files atms_n20, outer loop 01 [ OK ] Merging diag files atms_n20, outer loop 03 [ OK ] Merging diag files atms_n21, outer loop 01 [ OK ] Merging diag files atms_n21, outer loop 03 [ OK ] Merging diag files atms_npp, outer loop 01 [ OK ] Merging diag files atms_npp, outer loop 03 [ OK ] Merging diag files conv, outer loop 01 [ OK ] Merging diag files conv, outer loop 03 [ OK ] Merging diag files obs, outer loop setup [ OK ] >>> mergeDiagFiles do diagnostico da radiβncia /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062200/diag_amsua_metop-b_01.2026062200 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062200/diag_amsua_metop-b_03.2026062200 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062200/diag_amsua_metop-c_01.2026062200 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062200/diag_amsua_metop-c_03.2026062200 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062200/diag_atms_n20_01.2026062200 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062200/diag_atms_n20_03.2026062200 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062200/diag_atms_n21_01.2026062200 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062200/diag_atms_n21_03.2026062200 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062200/diag_atms_npp_01.2026062200 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062200/diag_atms_npp_03.2026062200 mv: cannot move '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062200/diag' to '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062200/diag': File exists cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062200/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062200/. cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062200/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062200/. 15 minutes and 34 seconds elapsed.  > Fim do GSI  Testando os dados convencionais do CPTEC se ok: 2026062200 >>>>>>> Verificar dados assimilados.... /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/./runPythonCheck.py:3: DeprecationWarning: You are importing the legacy package 'gsidiag'. This interface is deprecated and will be removed in a future major release. Please migrate to 'readDiag.open.open_diagnostic' and the DiagnosticAPI. import gsidiag as gd 2026-06-26 06:47:51,161 readDiag INFO read_conv_file completed in 1.180s ##### Lendo o arquivo do OMF: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062200/diag_conv_01.2026062200 ##### Lista das variaveis disponiveis no OMF (pfileinfo): Variable Name : ps └── kx => 120 180 181 187 Variable Name : t └── kx => 120 130 180 181 183 187 Variable Name : uv └── kx => 220 229 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 Variable Name : q └── kx => 120 180 2026-06-26 06:47:56,100 readDiag INFO read_conv_file completed in 1.137s ##### Lendo o arquivo do OMA: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062200/diag_conv_03.2026062200 ##### Lista das variaveis disponiveis no OMA (pfileinfo): Variable Name : ps └── kx => 120 180 181 187 Variable Name : t └── kx => 120 130 180 181 183 187 Variable Name : uv └── kx => 220 229 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 Variable Name : q └── kx => 120 180 ----------------- Fim do teste do Python --------------------  > Executando o MCGA  /bin/bash /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/scripts/run_model.sh 2026062200 2026062209 CPT 299 64 64 No This will run on EGEON Cluster ...[INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >> Submetendo o MCGA: 2026062200  > Resolucao (espectral) :  TQ0299L064  > Resolucao (grade) :  G00450L064   > Condicao Inicial :  2026062200  > Previsao ate :  2026062209  > Pos-proc. Ativado :  no  Running BAM Pre-process for 2026062200  SmoothTopo = .TRUE.  set PREFIX =  SMT [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026062200 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [RUN] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [NOT] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [NOT] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [NOT] SSTWeeklyNCEP [NOT] SSTWeekly [NOT] SNOWWeekly [NOT] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [NOT] TopographyGradient [INFO] Procurando an?lise NCEP para: 2026062200 [INFO] Detected: EGEON Cluster [INFO] Caminhos de busca: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain:/oper/dados/ioper/tempo/NCEP/input/2026/06/22/00 [INFO] Verificando diret?rio: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain [INFO] Arquivo encontrado: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas.T00Z.atmanl.netcdf.2026062200 ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026062200_1782467281  Running Pre-processes at egeon  Running PreBAM  [ OK ] 1st call to runPre. Status: 0  Running BAM Pre-process for 2026062200 [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026062200 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [NOT] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [RUN] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [RUN] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [RUN] SSTWeeklyNCEP [RUN] SSTWeekly [NOT] SNOWWeekly [RUN] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [RUN] TopographyGradient [INFO] Detected: EGEON Cluster [INFO] Searching SST on egeon [INFO] Target SST date: 2026062200 [INFO] Attempting SST retrieval (try 0) [INFO] Found file: /oper/dados/ioper/tempo/NCEP/input/2026/06/22/00/rtgssthr_grb_0.083.grib2.20260622 [INFO] Detected GRIB2 format (1 records) [GRIB2 CONVERSION:] SUCCESS [INFO] Detected: EGEON Cluster  Getting Soil Moisture file for: 2026062200 Search 0 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/GL_SM.GPNR.2026062200.vfm ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026062200_1782467740  Running Pre-processes at egeon  Running PreBAM  [ OK ] 2nd call to runPre. Status: 0 [INFO] Detected: EGEON Cluster running :: runModel -das -v -np 64 -N 16 -d 8 -t 299 -l 64 -I 2026062200 -F 2026062209 -W 2026062209 -px CPT -py CPT -s sstwkl -ts 3 -r -tr 6 -i -3 -s sstwkl [INFO] Detected: EGEON Cluster  Running BAM  [ OK ] 18 minutes and 44 seconds elapsed.  > Fim do MCGA   >>> Submetendo o Sistema SMNA_v3.0.0.t12717/SMG para o dia 2026062206   > Executando o GSI  [INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >>>> Carregando arquivos prepBufrs do NCEP  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/22 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : amsuabufrNCEP atmsbufrNCEP gpsrobufrNCEP satwndbufrNCEP [ OK ] link amsuabufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/22/gdas.t06z.1bamua.tm00.bufr_d ] [ OK ] link atmsbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/22/gdas.t06z.atms.tm00.bufr_d ] [ OK ] link gpsrobufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/22/gdas.t06z.gpsro.tm00.bufr_d.nr ] [ OK ] link satwndbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/22/gdas.t06z.satwnd.tm00.bufr_d ]  Found 4 observation files from NCEP to use  >>>> Carregando arquivos prepBufrs do INPE  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/22 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : prepbufrINPE [ OK ] link prepbufrINPE @ [ /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/22/inpe.t06z.prepbufr.nr ]  Found 1 observation files from INPE to use Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026062200/GFCTCPT20260622002026062203F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026062200/GFCTCPT20260622002026062206F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026062200/GFCTCPT20260622002026062209F.fct.TQ0299L064 Copy of Public fixed files cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062200/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062206/satbias_in cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062200/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062206/satbias_pc Entrando no ciclo de BcCycles para 0  Running GSI  using /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/gsiparm.anl to setup GSI run  [ OK ] >>> mergeDiagFiles Merging diag files amsua_metop-b, outer loop 01 [ OK ] Merging diag files amsua_metop-b, outer loop 03 [ OK ] Merging diag files amsua_metop-c, outer loop 01 [ OK ] Merging diag files amsua_metop-c, outer loop 03 [ OK ] Merging diag files atms_n20, outer loop 01 [ OK ] Merging diag files atms_n20, outer loop 03 [ OK ] Merging diag files atms_n21, outer loop 01 [ OK ] Merging diag files atms_n21, outer loop 03 [ OK ] Merging diag files atms_npp, outer loop 01 [ OK ] Merging diag files atms_npp, outer loop 03 [ OK ] Merging diag files conv, outer loop 01 [ OK ] Merging diag files conv, outer loop 03 [ OK ] Merging diag files obs, outer loop setup [ OK ] >>> mergeDiagFiles do diagnostico da radiβncia /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062206/diag_amsua_metop-b_01.2026062206 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062206/diag_amsua_metop-b_03.2026062206 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062206/diag_amsua_metop-c_01.2026062206 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062206/diag_amsua_metop-c_03.2026062206 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062206/diag_atms_n20_01.2026062206 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062206/diag_atms_n20_03.2026062206 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062206/diag_atms_n21_01.2026062206 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062206/diag_atms_n21_03.2026062206 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062206/diag_atms_npp_01.2026062206 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062206/diag_atms_npp_03.2026062206 mv: cannot move '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062206/diag' to '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062206/diag': File exists cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062206/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062206/. cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062206/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062206/. 13 minutes and 58 seconds elapsed.  > Fim do GSI  Testando os dados convencionais do CPTEC se ok: 2026062206 >>>>>>> Verificar dados assimilados.... /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/./runPythonCheck.py:3: DeprecationWarning: You are importing the legacy package 'gsidiag'. This interface is deprecated and will be removed in a future major release. Please migrate to 'readDiag.open.open_diagnostic' and the DiagnosticAPI. import gsidiag as gd 2026-06-26 07:20:47,437 readDiag INFO read_conv_file completed in 1.283s ##### Lendo o arquivo do OMF: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062206/diag_conv_01.2026062206 ##### Lista das variaveis disponiveis no OMF (pfileinfo): Variable Name : ps └── kx => 120 180 181 183 187 Variable Name : t └── kx => 120 130 180 181 183 187 Variable Name : uv └── kx => 220 229 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 Variable Name : q └── kx => 120 180 2026-06-26 07:20:52,662 readDiag INFO read_conv_file completed in 1.160s ##### Lendo o arquivo do OMA: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062206/diag_conv_03.2026062206 ##### Lista das variaveis disponiveis no OMA (pfileinfo): Variable Name : ps └── kx => 120 180 181 183 187 Variable Name : t └── kx => 120 130 180 181 183 187 Variable Name : uv └── kx => 220 229 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 Variable Name : q └── kx => 120 180 ----------------- Fim do teste do Python --------------------  > Executando o MCGA  /bin/bash /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/scripts/run_model.sh 2026062206 2026062215 CPT 299 64 64 No This will run on EGEON Cluster ...[INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >> Submetendo o MCGA: 2026062206  > Resolucao (espectral) :  TQ0299L064  > Resolucao (grade) :  G00450L064   > Condicao Inicial :  2026062206  > Previsao ate :  2026062215  > Pos-proc. Ativado :  no  Running BAM Pre-process for 2026062206  SmoothTopo = .TRUE.  set PREFIX =  SMT [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026062206 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [RUN] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [NOT] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [NOT] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [NOT] SSTWeeklyNCEP [NOT] SSTWeekly [NOT] SNOWWeekly [NOT] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [NOT] TopographyGradient [INFO] Procurando an?lise NCEP para: 2026062206 [INFO] Detected: EGEON Cluster [INFO] Caminhos de busca: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain:/oper/dados/ioper/tempo/NCEP/input/2026/06/22/06 [INFO] Verificando diret?rio: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain [INFO] Arquivo encontrado: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas.T06Z.atmanl.netcdf.2026062206 ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026062206_1782469259  Running Pre-processes at egeon  Running PreBAM  [ OK ] 1st call to runPre. Status: 0  Running BAM Pre-process for 2026062206 [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026062206 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [NOT] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [RUN] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [RUN] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [RUN] SSTWeeklyNCEP [RUN] SSTWeekly [NOT] SNOWWeekly [RUN] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [RUN] TopographyGradient [INFO] Detected: EGEON Cluster [INFO] Searching SST on egeon [INFO] Target SST date: 2026062206 [INFO] Attempting SST retrieval (try 0) [FAIL: No valid SST file found for 2026062206] [INFO] Trying earlier time step: 2026062200 [INFO] Checking if SST was previously converted... [INFO] Reusing previous SST file: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas1.T00Z.sstgrd.2026062200 [INFO] Detected: EGEON Cluster  Getting Soil Moisture file for: 2026062206 Search 0 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/GL_SM.GPNR.2026062206.vfm ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026062206_1782469718  Running Pre-processes at egeon  Running PreBAM  [ OK ] 2nd call to runPre. Status: 0 [INFO] Detected: EGEON Cluster running :: runModel -das -v -np 64 -N 16 -d 8 -t 299 -l 64 -I 2026062206 -F 2026062215 -W 2026062215 -px CPT -py CPT -s sstwkl -ts 3 -r -tr 6 -i -3 -s sstwkl [INFO] Detected: EGEON Cluster  Running BAM  [ OK ] 18 minutes and 42 seconds elapsed.  > Fim do MCGA   >>> Submetendo o Sistema SMNA_v3.0.0.t12717/SMG para o dia 2026062212   > Executando o GSI  [INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >>>> Carregando arquivos prepBufrs do NCEP  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/22 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : amsuabufrNCEP atmsbufrNCEP gpsrobufrNCEP satwndbufrNCEP [ OK ] link amsuabufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/22/gdas.t12z.1bamua.tm00.bufr_d ] [ OK ] link atmsbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/22/gdas.t12z.atms.tm00.bufr_d ] [ OK ] link gpsrobufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/22/gdas.t12z.gpsro.tm00.bufr_d.nr ] [ OK ] link satwndbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/22/gdas.t12z.satwnd.tm00.bufr_d ]  Found 4 observation files from NCEP to use  >>>> Carregando arquivos prepBufrs do INPE  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/22 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : prepbufrINPE [ OK ] link prepbufrINPE @ [ /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/22/inpe.t12z.prepbufr.nr ]  Found 1 observation files from INPE to use Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026062206/GFCTCPT20260622062026062209F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026062206/GFCTCPT20260622062026062212F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026062206/GFCTCPT20260622062026062215F.fct.TQ0299L064 Copy of Public fixed files cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062206/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062212/satbias_in cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062206/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062212/satbias_pc Entrando no ciclo de BcCycles para 0  Running GSI  using /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/gsiparm.anl to setup GSI run  [ OK ] >>> mergeDiagFiles Merging diag files amsua_metop-b, outer loop 01 [ OK ] Merging diag files amsua_metop-b, outer loop 03 [ OK ] Merging diag files amsua_metop-c, outer loop 01 [ OK ] Merging diag files amsua_metop-c, outer loop 03 [ OK ] Merging diag files atms_n20, outer loop 01 [ OK ] Merging diag files atms_n20, outer loop 03 [ OK ] Merging diag files atms_n21, outer loop 01 [ OK ] Merging diag files atms_n21, outer loop 03 [ OK ] Merging diag files atms_npp, outer loop 01 [ OK ] Merging diag files atms_npp, outer loop 03 [ OK ] Merging diag files conv, outer loop 01 [ OK ] Merging diag files conv, outer loop 03 [ OK ] Merging diag files obs, outer loop setup [ OK ] >>> mergeDiagFiles do diagnostico da radiβncia /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062212/diag_amsua_metop-b_01.2026062212 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062212/diag_amsua_metop-b_03.2026062212 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062212/diag_amsua_metop-c_01.2026062212 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062212/diag_amsua_metop-c_03.2026062212 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062212/diag_atms_n20_01.2026062212 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062212/diag_atms_n20_03.2026062212 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062212/diag_atms_n21_01.2026062212 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062212/diag_atms_n21_03.2026062212 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062212/diag_atms_npp_01.2026062212 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062212/diag_atms_npp_03.2026062212 mv: cannot move '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062212/diag' to '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062212/diag': File exists cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062212/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062212/. cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062212/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062212/. 13 minutes and 56 seconds elapsed.  > Fim do GSI  Testando os dados convencionais do CPTEC se ok: 2026062212 >>>>>>> Verificar dados assimilados.... /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/./runPythonCheck.py:3: DeprecationWarning: You are importing the legacy package 'gsidiag'. This interface is deprecated and will be removed in a future major release. Please migrate to 'readDiag.open.open_diagnostic' and the DiagnosticAPI. import gsidiag as gd 2026-06-26 07:53:38,041 readDiag INFO read_conv_file completed in 1.246s ##### Lendo o arquivo do OMF: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062212/diag_conv_01.2026062212 ##### Lista das variaveis disponiveis no OMF (pfileinfo): Variable Name : ps └── kx => 120 180 181 183 187 Variable Name : t └── kx => 120 130 180 181 183 187 Variable Name : uv └── kx => 220 229 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 Variable Name : q └── kx => 120 180 2026-06-26 07:53:43,260 readDiag INFO read_conv_file completed in 1.132s ##### Lendo o arquivo do OMA: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062212/diag_conv_03.2026062212 ##### Lista das variaveis disponiveis no OMA (pfileinfo): Variable Name : ps └── kx => 120 180 181 183 187 Variable Name : t └── kx => 120 130 180 181 183 187 Variable Name : uv └── kx => 220 229 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 Variable Name : q └── kx => 120 180 ----------------- Fim do teste do Python --------------------  > Executando o MCGA  /bin/bash /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/scripts/run_model.sh 2026062212 2026062221 CPT 299 64 64 No This will run on EGEON Cluster ...[INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >> Submetendo o MCGA: 2026062212  > Resolucao (espectral) :  TQ0299L064  > Resolucao (grade) :  G00450L064   > Condicao Inicial :  2026062212  > Previsao ate :  2026062221  > Pos-proc. Ativado :  no  Running BAM Pre-process for 2026062212  SmoothTopo = .TRUE.  set PREFIX =  SMT [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026062212 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [RUN] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [NOT] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [NOT] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [NOT] SSTWeeklyNCEP [NOT] SSTWeekly [NOT] SNOWWeekly [NOT] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [NOT] TopographyGradient [INFO] Procurando an?lise NCEP para: 2026062212 [INFO] Detected: EGEON Cluster [INFO] Caminhos de busca: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain:/oper/dados/ioper/tempo/NCEP/input/2026/06/22/12 [INFO] Verificando diret?rio: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain [INFO] Arquivo encontrado: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas.T12Z.atmanl.netcdf.2026062212 ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026062212_1782471228  Running Pre-processes at egeon  Running PreBAM  [ OK ] 1st call to runPre. Status: 0  Running BAM Pre-process for 2026062212 [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026062212 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [NOT] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [RUN] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [RUN] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [RUN] SSTWeeklyNCEP [RUN] SSTWeekly [NOT] SNOWWeekly [RUN] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [RUN] TopographyGradient [INFO] Detected: EGEON Cluster [INFO] Searching SST on egeon [INFO] Target SST date: 2026062212 [INFO] Attempting SST retrieval (try 0) [FAIL: No valid SST file found for 2026062212] [INFO] Trying earlier time step: 2026062206 [INFO] Checking if SST was previously converted... [INFO] Reusing previous SST file: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas1.T06Z.sstgrd.2026062206 [INFO] Detected: EGEON Cluster  Getting Soil Moisture file for: 2026062212 Search 0 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/GL_SM.GPNR.2026062212.vfm ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026062212_1782471687  Running Pre-processes at egeon  Running PreBAM  [ OK ] 2nd call to runPre. Status: 0 [INFO] Detected: EGEON Cluster running :: runModel -das -v -np 64 -N 16 -d 8 -t 299 -l 64 -I 2026062212 -F 2026062221 -W 2026062221 -px CPT -py CPT -s sstwkl -ts 3 -r -tr 6 -i -3 -s sstwkl [INFO] Detected: EGEON Cluster  Running BAM  [ OK ] 18 minutes and 40 seconds elapsed.  > Fim do MCGA   >>> Submetendo o Sistema SMNA_v3.0.0.t12717/SMG para o dia 2026062218   > Executando o GSI  [INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >>>> Carregando arquivos prepBufrs do NCEP  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/22 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : amsuabufrNCEP atmsbufrNCEP gpsrobufrNCEP satwndbufrNCEP [ OK ] link amsuabufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/22/gdas.t18z.1bamua.tm00.bufr_d ] [ OK ] link atmsbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/22/gdas.t18z.atms.tm00.bufr_d ] [ OK ] link gpsrobufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/22/gdas.t18z.gpsro.tm00.bufr_d.nr ] [ OK ] link satwndbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/22/gdas.t18z.satwnd.tm00.bufr_d ]  Found 4 observation files from NCEP to use  >>>> Carregando arquivos prepBufrs do INPE  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/22 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : prepbufrINPE [ OK ] link prepbufrINPE @ [ /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/22/inpe.t18z.prepbufr.nr ]  Found 1 observation files from INPE to use Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026062212/GFCTCPT20260622122026062215F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026062212/GFCTCPT20260622122026062218F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026062212/GFCTCPT20260622122026062221F.fct.TQ0299L064 Copy of Public fixed files cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062212/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062218/satbias_in cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062212/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062218/satbias_pc Entrando no ciclo de BcCycles para 0  Running GSI  using /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/gsiparm.anl to setup GSI run  [ OK ] >>> mergeDiagFiles Merging diag files amsua_metop-b, outer loop 01 [ OK ] Merging diag files amsua_metop-b, outer loop 03 [ OK ] Merging diag files amsua_metop-c, outer loop 01 [ OK ] Merging diag files amsua_metop-c, outer loop 03 [ OK ] Merging diag files atms_n20, outer loop 01 [ OK ] Merging diag files atms_n20, outer loop 03 [ OK ] Merging diag files atms_n21, outer loop 01 [ OK ] Merging diag files atms_n21, outer loop 03 [ OK ] Merging diag files atms_npp, outer loop 01 [ OK ] Merging diag files atms_npp, outer loop 03 [ OK ] Merging diag files conv, outer loop 01 [ OK ] Merging diag files conv, outer loop 03 [ OK ] Merging diag files obs, outer loop setup [ OK ] >>> mergeDiagFiles do diagnostico da radiβncia /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062218/diag_amsua_metop-b_01.2026062218 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062218/diag_amsua_metop-b_03.2026062218 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062218/diag_amsua_metop-c_01.2026062218 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062218/diag_amsua_metop-c_03.2026062218 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062218/diag_atms_n20_01.2026062218 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062218/diag_atms_n20_03.2026062218 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062218/diag_atms_n21_01.2026062218 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062218/diag_atms_n21_03.2026062218 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062218/diag_atms_npp_01.2026062218 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062218/diag_atms_npp_03.2026062218 mv: cannot move '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062218/diag' to '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062218/diag': File exists cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062218/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062218/. cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062218/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062218/. 14 minutes and 28 seconds elapsed.  > Fim do GSI  Testando os dados convencionais do CPTEC se ok: 2026062218 >>>>>>> Verificar dados assimilados.... /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/./runPythonCheck.py:3: DeprecationWarning: You are importing the legacy package 'gsidiag'. This interface is deprecated and will be removed in a future major release. Please migrate to 'readDiag.open.open_diagnostic' and the DiagnosticAPI. import gsidiag as gd 2026-06-26 08:26:58,682 readDiag INFO read_conv_file completed in 1.022s ##### Lendo o arquivo do OMF: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062218/diag_conv_01.2026062218 ##### Lista das variaveis disponiveis no OMF (pfileinfo): Variable Name : uv └── kx => 240 242 243 244 245 246 247 250 252 253 254 255 260 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 2026-06-26 08:27:02,577 readDiag INFO read_conv_file completed in 0.945s ##### Lendo o arquivo do OMA: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062218/diag_conv_03.2026062218 ##### Lista das variaveis disponiveis no OMA (pfileinfo): Variable Name : uv └── kx => 240 242 243 244 245 246 247 250 252 253 254 255 260 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 ----------------- Fim do teste do Python --------------------  > Executando o MCGA  /bin/bash /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/scripts/run_model.sh 2026062218 2026062303 CPT 299 64 64 No This will run on EGEON Cluster ...[INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >> Submetendo o MCGA: 2026062218  > Resolucao (espectral) :  TQ0299L064  > Resolucao (grade) :  G00450L064   > Condicao Inicial :  2026062218  > Previsao ate :  2026062303  > Pos-proc. Ativado :  no  Running BAM Pre-process for 2026062218  SmoothTopo = .TRUE.  set PREFIX =  SMT [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026062218 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [RUN] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [NOT] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [NOT] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [NOT] SSTWeeklyNCEP [NOT] SSTWeekly [NOT] SNOWWeekly [NOT] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [NOT] TopographyGradient [INFO] Procurando an?lise NCEP para: 2026062218 [INFO] Detected: EGEON Cluster [INFO] Caminhos de busca: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain:/oper/dados/ioper/tempo/NCEP/input/2026/06/22/18 [INFO] Verificando diret?rio: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain [INFO] Arquivo encontrado: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas.T18Z.atmanl.netcdf.2026062218 ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026062218_1782473226  Running Pre-processes at egeon  Running PreBAM  [ OK ] 1st call to runPre. Status: 0  Running BAM Pre-process for 2026062218 [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026062218 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [NOT] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [RUN] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [RUN] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [RUN] SSTWeeklyNCEP [RUN] SSTWeekly [NOT] SNOWWeekly [RUN] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [RUN] TopographyGradient [INFO] Detected: EGEON Cluster [INFO] Searching SST on egeon [INFO] Target SST date: 2026062218 [INFO] Attempting SST retrieval (try 0) [FAIL: No valid SST file found for 2026062218] [INFO] Trying earlier time step: 2026062212 [INFO] Checking if SST was previously converted... [INFO] Reusing previous SST file: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas1.T12Z.sstgrd.2026062212 [INFO] Detected: EGEON Cluster  Getting Soil Moisture file for: 2026062218 Search 0 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/GL_SM.GPNR.2026062218.vfm ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026062218_1782473685  Running Pre-processes at egeon  Running PreBAM  [ OK ] 2nd call to runPre. Status: 0 [INFO] Detected: EGEON Cluster running :: runModel -das -v -np 64 -N 16 -d 8 -t 299 -l 64 -I 2026062218 -F 2026062303 -W 2026062303 -px CPT -py CPT -s sstwkl -ts 3 -r -tr 6 -i -3 -s sstwkl [INFO] Detected: EGEON Cluster  Running BAM  [ OK ] 18 minutes and 40 seconds elapsed.  > Fim do MCGA   >>> Submetendo o Sistema SMNA_v3.0.0.t12717/SMG para o dia 2026062300   > Executando o GSI  [INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >>>> Carregando arquivos prepBufrs do NCEP  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/23 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : amsuabufrNCEP atmsbufrNCEP gpsrobufrNCEP satwndbufrNCEP [ OK ] link amsuabufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/23/gdas.t00z.1bamua.tm00.bufr_d ] [ OK ] link atmsbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/23/gdas.t00z.atms.tm00.bufr_d ] [ OK ] link gpsrobufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/23/gdas.t00z.gpsro.tm00.bufr_d.nr ] [ OK ] link satwndbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/23/gdas.t00z.satwnd.tm00.bufr_d ]  Found 4 observation files from NCEP to use  >>>> Carregando arquivos prepBufrs do INPE  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/23 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : prepbufrINPE [ OK ] link prepbufrINPE @ [ /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/23/inpe.t00z.prepbufr.nr ]  Found 1 observation files from INPE to use Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026062218/GFCTCPT20260622182026062221F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026062218/GFCTCPT20260622182026062300F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026062218/GFCTCPT20260622182026062303F.fct.TQ0299L064 Copy of Public fixed files cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062218/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062300/satbias_in cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062218/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062300/satbias_pc Entrando no ciclo de BcCycles para 0  Running GSI  using /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/gsiparm.anl to setup GSI run  [ OK ] >>> mergeDiagFiles Merging diag files amsua_metop-b, outer loop 01 [ OK ] Merging diag files amsua_metop-b, outer loop 03 [ OK ] Merging diag files amsua_metop-c, outer loop 01 [ OK ] Merging diag files amsua_metop-c, outer loop 03 [ OK ] Merging diag files atms_n20, outer loop 01 [ OK ] Merging diag files atms_n20, outer loop 03 [ OK ] Merging diag files atms_n21, outer loop 01 [ OK ] Merging diag files atms_n21, outer loop 03 [ OK ] Merging diag files atms_npp, outer loop 01 [ OK ] Merging diag files atms_npp, outer loop 03 [ OK ] Merging diag files conv, outer loop 01 [ OK ] Merging diag files conv, outer loop 03 [ OK ] Merging diag files obs, outer loop setup [ OK ] >>> mergeDiagFiles do diagnostico da radiβncia /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062300/diag_amsua_metop-b_01.2026062300 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062300/diag_amsua_metop-b_03.2026062300 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062300/diag_amsua_metop-c_01.2026062300 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062300/diag_amsua_metop-c_03.2026062300 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062300/diag_atms_n20_01.2026062300 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062300/diag_atms_n20_03.2026062300 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062300/diag_atms_n21_01.2026062300 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062300/diag_atms_n21_03.2026062300 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062300/diag_atms_npp_01.2026062300 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062300/diag_atms_npp_03.2026062300 mv: cannot move '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062300/diag' to '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062300/diag': File exists cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062300/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062300/. cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062300/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062300/. 15 minutes and 1 seconds elapsed.  > Fim do GSI  Testando os dados convencionais do CPTEC se ok: 2026062300 >>>>>>> Verificar dados assimilados.... /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/./runPythonCheck.py:3: DeprecationWarning: You are importing the legacy package 'gsidiag'. This interface is deprecated and will be removed in a future major release. Please migrate to 'readDiag.open.open_diagnostic' and the DiagnosticAPI. import gsidiag as gd 2026-06-26 09:00:49,566 readDiag INFO read_conv_file completed in 1.306s ##### Lendo o arquivo do OMF: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062300/diag_conv_01.2026062300 ##### Lista das variaveis disponiveis no OMF (pfileinfo): Variable Name : ps └── kx => 120 180 181 183 187 Variable Name : t └── kx => 120 130 180 181 183 187 Variable Name : uv └── kx => 220 229 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 Variable Name : q └── kx => 120 180 2026-06-26 09:00:54,784 readDiag INFO read_conv_file completed in 1.127s ##### Lendo o arquivo do OMA: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062300/diag_conv_03.2026062300 ##### Lista das variaveis disponiveis no OMA (pfileinfo): Variable Name : ps └── kx => 120 180 181 183 187 Variable Name : t └── kx => 120 130 180 181 183 187 Variable Name : uv └── kx => 220 229 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 Variable Name : q └── kx => 120 180 ----------------- Fim do teste do Python --------------------  > Executando o MCGA  /bin/bash /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/scripts/run_model.sh 2026062300 2026062309 CPT 299 64 64 No This will run on EGEON Cluster ...[INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >> Submetendo o MCGA: 2026062300  > Resolucao (espectral) :  TQ0299L064  > Resolucao (grade) :  G00450L064   > Condicao Inicial :  2026062300  > Previsao ate :  2026062309  > Pos-proc. Ativado :  no  Running BAM Pre-process for 2026062300  SmoothTopo = .TRUE.  set PREFIX =  SMT [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026062300 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [RUN] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [NOT] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [NOT] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [NOT] SSTWeeklyNCEP [NOT] SSTWeekly [NOT] SNOWWeekly [NOT] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [NOT] TopographyGradient [INFO] Procurando an?lise NCEP para: 2026062300 [INFO] Detected: EGEON Cluster [INFO] Caminhos de busca: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain:/oper/dados/ioper/tempo/NCEP/input/2026/06/23/00 [INFO] Verificando diret?rio: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain [INFO] Arquivo encontrado: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas.T00Z.atmanl.netcdf.2026062300 ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026062300_1782475259  Running Pre-processes at egeon  Running PreBAM  [ OK ] 1st call to runPre. Status: 0  Running BAM Pre-process for 2026062300 [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026062300 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [NOT] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [RUN] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [RUN] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [RUN] SSTWeeklyNCEP [RUN] SSTWeekly [NOT] SNOWWeekly [RUN] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [RUN] TopographyGradient [INFO] Detected: EGEON Cluster [INFO] Searching SST on egeon [INFO] Target SST date: 2026062300 [INFO] Attempting SST retrieval (try 0) [INFO] Found file: /oper/dados/ioper/tempo/NCEP/input/2026/06/23/00/rtgssthr_grb_0.083.grib2.20260623 [INFO] Detected GRIB2 format (1 records) [GRIB2 CONVERSION:] SUCCESS [INFO] Detected: EGEON Cluster  Getting Soil Moisture file for: 2026062300 Search 0 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/GL_SM.GPNR.2026062300.vfm ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026062300_1782475718  Running Pre-processes at egeon  Running PreBAM  [ OK ] 2nd call to runPre. Status: 0 [INFO] Detected: EGEON Cluster running :: runModel -das -v -np 64 -N 16 -d 8 -t 299 -l 64 -I 2026062300 -F 2026062309 -W 2026062309 -px CPT -py CPT -s sstwkl -ts 3 -r -tr 6 -i -3 -s sstwkl [INFO] Detected: EGEON Cluster  Running BAM  [ OK ] 18 minutes and 46 seconds elapsed.  > Fim do MCGA   >>> Submetendo o Sistema SMNA_v3.0.0.t12717/SMG para o dia 2026062306   > Executando o GSI  [INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >>>> Carregando arquivos prepBufrs do NCEP  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/23 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : amsuabufrNCEP atmsbufrNCEP gpsrobufrNCEP satwndbufrNCEP [ OK ] link amsuabufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/23/gdas.t06z.1bamua.tm00.bufr_d ] [ OK ] link atmsbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/23/gdas.t06z.atms.tm00.bufr_d ] [ OK ] link gpsrobufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/23/gdas.t06z.gpsro.tm00.bufr_d.nr ] [ OK ] link satwndbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/23/gdas.t06z.satwnd.tm00.bufr_d ]  Found 4 observation files from NCEP to use  >>>> Carregando arquivos prepBufrs do INPE  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/23 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : prepbufrINPE [ OK ] link prepbufrINPE @ [ /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/23/inpe.t06z.prepbufr.nr ]  Found 1 observation files from INPE to use Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026062300/GFCTCPT20260623002026062303F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026062300/GFCTCPT20260623002026062306F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026062300/GFCTCPT20260623002026062309F.fct.TQ0299L064 Copy of Public fixed files cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062300/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062306/satbias_in cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062300/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062306/satbias_pc Entrando no ciclo de BcCycles para 0  Running GSI  using /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/gsiparm.anl to setup GSI run  [ OK ] >>> mergeDiagFiles Merging diag files amsua_metop-b, outer loop 01 [ OK ] Merging diag files amsua_metop-b, outer loop 03 [ OK ] Merging diag files amsua_metop-c, outer loop 01 [ OK ] Merging diag files amsua_metop-c, outer loop 03 [ OK ] Merging diag files atms_n20, outer loop 01 [ OK ] Merging diag files atms_n20, outer loop 03 [ OK ] Merging diag files atms_n21, outer loop 01 [ OK ] Merging diag files atms_n21, outer loop 03 [ OK ] Merging diag files atms_npp, outer loop 01 [ OK ] Merging diag files atms_npp, outer loop 03 [ OK ] Merging diag files conv, outer loop 01 [ OK ] Merging diag files conv, outer loop 03 [ OK ] Merging diag files obs, outer loop setup [ OK ] >>> mergeDiagFiles do diagnostico da radiβncia /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062306/diag_amsua_metop-b_01.2026062306 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062306/diag_amsua_metop-b_03.2026062306 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062306/diag_amsua_metop-c_01.2026062306 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062306/diag_amsua_metop-c_03.2026062306 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062306/diag_atms_n20_01.2026062306 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062306/diag_atms_n20_03.2026062306 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062306/diag_atms_n21_01.2026062306 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062306/diag_atms_n21_03.2026062306 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062306/diag_atms_npp_01.2026062306 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062306/diag_atms_npp_03.2026062306 mv: cannot move '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062306/diag' to '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062306/diag': File exists cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062306/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062306/. cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062306/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062306/. 13 minutes and 58 seconds elapsed.  > Fim do GSI  Testando os dados convencionais do CPTEC se ok: 2026062306 >>>>>>> Verificar dados assimilados.... /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/./runPythonCheck.py:3: DeprecationWarning: You are importing the legacy package 'gsidiag'. This interface is deprecated and will be removed in a future major release. Please migrate to 'readDiag.open.open_diagnostic' and the DiagnosticAPI. import gsidiag as gd 2026-06-26 09:33:44,648 readDiag INFO read_conv_file completed in 1.294s ##### Lendo o arquivo do OMF: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062306/diag_conv_01.2026062306 ##### Lista das variaveis disponiveis no OMF (pfileinfo): Variable Name : ps └── kx => 120 180 181 183 187 Variable Name : t └── kx => 120 130 180 181 183 187 Variable Name : uv └── kx => 220 229 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 Variable Name : q └── kx => 120 180 2026-06-26 09:33:49,754 readDiag INFO read_conv_file completed in 1.135s ##### Lendo o arquivo do OMA: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062306/diag_conv_03.2026062306 ##### Lista das variaveis disponiveis no OMA (pfileinfo): Variable Name : ps └── kx => 120 180 181 183 187 Variable Name : t └── kx => 120 130 180 181 183 187 Variable Name : uv └── kx => 220 229 230 240 242 243 244 245 246 247 250 252 253 254 255 260 280 281 284 287 Variable Name : gps └── kx => 3 5 42 43 44 66 267 269 750 751 753 754 755 825 Variable Name : q └── kx => 120 180 ----------------- Fim do teste do Python --------------------  > Executando o MCGA  /bin/bash /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/run/scripts/run_model.sh 2026062306 2026062315 CPT 299 64 64 No This will run on EGEON Cluster ...[INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >> Submetendo o MCGA: 2026062306  > Resolucao (espectral) :  TQ0299L064  > Resolucao (grade) :  G00450L064   > Condicao Inicial :  2026062306  > Previsao ate :  2026062315  > Pos-proc. Ativado :  no  Running BAM Pre-process for 2026062306  SmoothTopo = .TRUE.  set PREFIX =  SMT [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026062306 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [RUN] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [NOT] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [NOT] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [NOT] SSTWeeklyNCEP [NOT] SSTWeekly [NOT] SNOWWeekly [NOT] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [NOT] TopographyGradient [INFO] Procurando an?lise NCEP para: 2026062306 [INFO] Detected: EGEON Cluster [INFO] Caminhos de busca: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain:/oper/dados/ioper/tempo/NCEP/input/2026/06/23/06 [INFO] Verificando diret?rio: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain [INFO] Arquivo encontrado: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas.T06Z.atmanl.netcdf.2026062306 ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026062306_1782477234  Running Pre-processes at egeon  Running PreBAM  [ OK ] 1st call to runPre. Status: 0  Running BAM Pre-process for 2026062306 [INFO] Detected: EGEON Cluster [INFO] MPI/OpenMP layout resolved: MPI ranks (MPITasks) : 128 Threads per rank (-d) : 1 Total logical cores : 128 Cores per node : 128 Compute nodes : 1 Tasks per node : 128 SLURM flags : --nodes=1 --ntasks=128 --cpus-per-task=1 PBS flags : -l select=1:ncpus=128:mpiprocs=128:ompthreads=1 --- Final runPre configuration --- TRC=299 LV=64 LABELI=2026062306 MPI tasks=128 Threads/task=1 Nodes=1 ----------------------------------- list of processes that will be executed [NOT] TopoWaterPercNavy [NOT] TopoWaterPercGT30 [NOT] NormalModes [NOT] LandSeaMask [NOT] VarTopo [NOT] TopoSpectral [NOT] Chopping [NOT] VegetationMaskSSiB [NOT] VegetationMask [NOT] VegetationMaskIBISClima [NOT] VegetationMaskIBIS [NOT] VegetationAlbedoSSiB [NOT] DeepSoilTemperatureClima [NOT] DeepSoilTemperature [NOT] RoughnessLengthClima [NOT] RoughnessLength [NOT] SoilMoistureClima [RUN] SoilMoisture [NOT] AlbedoClima [NOT] Albedo [RUN] SnowClima [NOT] SSTClima [NOT] FLUXCO2Clima [RUN] SSTWeeklyNCEP [RUN] SSTWeekly [NOT] SNOWWeekly [RUN] SoilMoistureWeekly [NOT] CLimaSoilMoistureClima [NOT] CLimaSoilMoisture [NOT] TemperatureClima [NOT] Temperature [NOT] DeltaTempColdestClima [NOT] DeltaTempColdest [NOT] NDVIClima [NOT] NDVI [NOT] OCMClima [NOT] CO2MonthlyDirec [NOT] SSTDailyDirec [NOT] SSTSeasonDirec [NOT] PorceClayMaskIBISClima [NOT] PorceClayMaskIBIS [NOT] PorceSandMaskIBISClima [NOT] PorceSandMaskIBIS [NOT] SSTMonthlyDirec [RUN] TopographyGradient [INFO] Detected: EGEON Cluster [INFO] Searching SST on egeon [INFO] Target SST date: 2026062306 [INFO] Attempting SST retrieval (try 0) [FAIL: No valid SST file found for 2026062306] [INFO] Trying earlier time step: 2026062300 [INFO] Checking if SST was previously converted... [INFO] Reusing previous SST file: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/gdas1.T00Z.sstgrd.2026062300 [INFO] Detected: EGEON Cluster  Getting Soil Moisture file for: 2026062306 Search 0 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/datain/GL_SM.GPNR.2026062306.vfm ln: /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/pre/databcs/gtopo30: cannot overwrite directory  Log Label: 2026062306_1782477661  Running Pre-processes at egeon  Running PreBAM  [ OK ] 2nd call to runPre. Status: 0 [INFO] Detected: EGEON Cluster running :: runModel -das -v -np 64 -N 16 -d 8 -t 299 -l 64 -I 2026062306 -F 2026062315 -W 2026062315 -px CPT -py CPT -s sstwkl -ts 3 -r -tr 6 -i -3 -s sstwkl [INFO] Detected: EGEON Cluster  Running BAM  [ OK ] 18 minutes and 9 seconds elapsed.  > Fim do MCGA   >>> Submetendo o Sistema SMNA_v3.0.0.t12717/SMG para o dia 2026062312   > Executando o GSI  [INFO] Installation path: SMG_ROOT=/home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG [INFO] Selected option: vars_export [INFO] Detected: EGEON Cluster [INFO] Using local CMake at: /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/util/cmake/bin/cmake [WARNING] Conda environment detected: /home/caroline.viezel/.conda/envs/readDiagGerd [ACTION] Deactivating Conda... [ OK ] Conda has been disabled. [ OK ] Running: vars_export  >>>> Carregando arquivos prepBufrs do NCEP  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/23 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : amsuabufrNCEP atmsbufrNCEP gpsrobufrNCEP satwndbufrNCEP [ OK ] link amsuabufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/23/gdas.t12z.1bamua.tm00.bufr_d ] [ OK ] link atmsbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/23/gdas.t12z.atms.tm00.bufr_d ] [ OK ] link gpsrobufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/23/gdas.t12z.gpsro.tm00.bufr_d.nr ] [ OK ] link satwndbufrNCEP @ [ /oper/dados/dboper/raw/arch/mod/ncep/gdas/2026/06/23/gdas.t12z.satwnd.tm00.bufr_d ]  Found 4 observation files from NCEP to use  >>>> Carregando arquivos prepBufrs do INPE  @linkObs : obsPath : /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/23 obsGSI : /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/obsfiles.rc parmGSI : names : prepbufrINPE [ OK ] link prepbufrINPE @ [ /oper/dados/dboper/raw/arch/mod/cptec/gdas/2026/06/23/inpe.t12z.prepbufr.nr ]  Found 1 observation files from INPE to use Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026062306/GFCTCPT20260623062026062309F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026062306/GFCTCPT20260623062026062312F.fct.TQ0299L064 Forecast file : /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/bam/model/dataout/TQ0299L064/DAS/2026062306/GFCTCPT20260623062026062315F.fct.TQ0299L064 Copy of Public fixed files cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062306/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062312/satbias_in cp -pfr /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062306/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062312/satbias_pc Entrando no ciclo de BcCycles para 0  Running GSI  using /home/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/cptec/gsi/fix/gsiparm.anl to setup GSI run  [ OK ] >>> mergeDiagFiles Merging diag files amsua_metop-b, outer loop 01 [ OK ] Merging diag files amsua_metop-b, outer loop 03 [ OK ] Merging diag files amsua_metop-c, outer loop 01 [ OK ] Merging diag files amsua_metop-c, outer loop 03 [ OK ] Merging diag files atms_n20, outer loop 01 [ OK ] Merging diag files atms_n20, outer loop 03 [ OK ] Merging diag files atms_n21, outer loop 01 [ OK ] Merging diag files atms_n21, outer loop 03 [ OK ] Merging diag files atms_npp, outer loop 01 [ OK ] Merging diag files atms_npp, outer loop 03 [ OK ] Merging diag files conv, outer loop 01 [ OK ] Merging diag files conv, outer loop 03 [ OK ] Merging diag files obs, outer loop setup [ OK ] >>> mergeDiagFiles do diagnostico da radiβncia /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062312/diag_amsua_metop-b_01.2026062312 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062312/diag_amsua_metop-b_03.2026062312 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062312/diag_amsua_metop-c_01.2026062312 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062312/diag_amsua_metop-c_03.2026062312 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062312/diag_atms_n20_01.2026062312 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062312/diag_atms_n20_03.2026062312 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062312/diag_atms_n21_01.2026062312 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062312/diag_atms_n21_03.2026062312 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062312/diag_atms_npp_01.2026062312 /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062312/diag_atms_npp_03.2026062312 mv: cannot move '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062312/diag' to '/mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062312/diag': File exists cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062312/satbias_out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062312/. cp -pf /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datarun/gsi/2026062312/satbias_pc.out /mnt/beegfs/luiz.sapucci/SMNA_v3.0.0.t12717/SMG/datainout/gsi/dataout/2026062312/.